The following information is an addendum to Table S4 and provides genomic coordinates, inserted sequences at the sites of deletion, and deletion extents (in some cases corrected). These were determined by BLAST analysis of the deletion junction sequences in Table S4.
ssR1Δ
 3R:16418350..16424576 
inserted sequence: GGTACC
6,227bp deletion within ss and insertion of GGTACC at the site of the deletion.
ssR2Δ  3R:16411625..16418485  inserted sequence: AC 6,861bp deletion within ss and insertion of AC at the site of the deletion.
ssEEΔ  3R:16410415..16411693  inserted sequence: GGATC 1,279bp deletion within ss and insertion of GGATC at the site of the deletion.
sspEEΔ  3R:16406379..16410467  inserted sequence: GAATTC 4,089bp deletion within ss and insertion of GAATTC at the site of the deletion.
ssextEEΔ  3R:16406378..16411690  inserted sequence: ATTC 5,313bp deletion within ss and insertion of ATTC at the site of the deletion. The deletion extent was determined by a BLAST of the junction sequences.
ssR3Δ  3R:16403008..16406538  inserted sequence: GAATTC 3,531bp deletion within ss and insertion of GAATTC at the site of the deletion.
ssPΔ  3R:16403008..16405104  inserted sequence: ATTC 2097bp deletion within ss and insertion of ATTC at the site of the deletion.
ssR4Δ  3R:16400110..16401652  inserted sequence: GGTACC  1,543bp deletion within ss and insertion of GGTACC at the site of the deletion.
ssenh-del (reported as LEΔ</up>) 3R:16396529..16400114 inserted sequence: GAATTC 3586bp deletion within ss@ and insertion of GAATTC at the site of the deletion.
ssR5Δ  3R:16395804..16397447  inserted sequence: GAATT 1,644bp deletion within ss and insertion of GAATT at the site of the deletion.
ssR6Δ  3R:16386586..16390429  inserted sequence: ATTC 3,844bp deletion within ss and insertion of ATTC at the site of the deletion.
ssR7Δ  3R:16384374..16386768  inserted sequence: GAATTC 2,395bp deletion within ss and insertion of GAATTC at the site of the deletion.
ssR8Δ  3R:16379947..16383879  inserted sequence: GAATTC 3,933bp deletion within ss and insertion of GAATTC at the site of the deletion.
ssR9Δ</up> 3R:16370963..16375831  inserted sequence: ATCC 4,869bp deletion within ss and insertion of ATCC at the site of the deletion.
ssup-del (reported as PRE12Δ</up>)3R:16411625..16424577 inserted sequence: GCCGGC 12,953bp deletion within ss@ and insertion of GCCGGC at the site of the deletion.