FB2026_03 , released September 17, 2026
Sequence Feature: Dmel\Dmel:r6:2L:15523373:15523431:+
Open Close
General Information
Symbol
Dmel\Dmel:r6:2L:15523373:15523431:+
Species
D. melanogaster
Feature type
exon_junction
FlyBase ID
FBsf0000439694
Collection
Associated gene
Genomic Location
Chromosome (arm)
2L
Sequence location

2L:15,523,373..15,523,431 [+]

Genomic Maps
Sequence Data
Length
Comments

GTAG

Associated Information
Gene(s) (targeted or local)
Allele(s)
    Transcripts(s)
      Polypeptide(s)
        Construct
          Experimental Data
          RNA-Seq Read Counts
          Dataset: modENCODE_mRNA-Seq_EXTRA_junctions
          modENCODE_mRNA-Seq_EXTRA_junctions
          Expression stage(s)
          Read Count
          embryonic stage 1 -- 4

          Comment: 0-2 hr AEL

          0
          embryonic stage 4 -- 9

          Comment: 2-4 hr AEL

          0
          embryonic stage 9 -- 11

          Comment: 4-6 hr AEL

          0
          embryonic stage 11 -- 12

          Comment: 6-8 hr AEL

          0
          embryonic stage 12 -- 13

          Comment: 8-10 hr AEL

          0
          embryonic stage 13 -- 15

          Comment: 10-12 hr AEL

          0
          embryonic stage 15 -- 16

          Comment: 12-14 hr AEL

          0
          embryonic stage 16

          Comment: 14-16 hr AEL

          0
          embryonic stage 17(i)

          Comment: 16-18 hr AEL

          0
          embryonic stage 17(ii)

          Comment: 18-20 hr AEL

          0
          embryonic stage 17(iii)

          Comment: 20-22 hr AEL

          0
          embryonic stage 17(iv)

          Comment: 22-24 hr AEL

          0
          first instar larval stage

          Comment: 42-44hr AEL

          0
          second instar larval stage

          Comment: 66-70h AEL

          0
          early third instar larval stage

          Comment: 83-85hr AEL

          0
          third instar - uncleared gut stage

          Comment: indicated as puff stage 1-2

          2
          third instar - partially cleared gut stage

          Comment: indicated as puff stage 3-6

          0
          third instar - cleared gut stage

          Comment: indicated as puff stage 7-9

          0
          prepupal stage P1
          0
          pupal stage P5

          Comment: aged 12 hrs after collection as white prepupae

          1
          pupal stage P6

          Comment: aged 24 hrs after collection as white prepupae

          2
          pharate adult stage P8

          Comment: aged 2 days after collection as white prepupae

          5
          pharate adult stage P9 -- P10

          Comment: aged 3 days after collection as white prepupae

          3
          pharate adult stage P15

          Comment: aged 4 days after collection as white prepupae

          2
          day 1 of adulthood | female

          Comment: aged 1 day after eclosion

          0
          day 1 of adulthood | male

          Comment: aged 1 day after eclosion

          4
          day 5 of adulthood | female

          Comment: aged 5 days after eclosion

          0
          day 5 of adulthood | male

          Comment: aged 5 days after eclosion

          12
          day 30 of adulthood | female

          Comment: aged 30 days after eclosion

          0
          day 30 of adulthood | male

          Comment: aged 30 days after eclosion

          5
          Total
          36
          Collection Information
          Collection: modENCODE_mRNA-Seq_EXTRA_junctions
          Symbol
          modENCODE_mRNA-Seq_EXTRA_junctions
          Title
          Exon junction identification (low confidence) from RNA-Seq assays of D. melanogaster, iso-1 strain, 30 developmental stages.
          Source and Progenitors
          Species of derivation
          D. melanogaster
          Strain of derivation
          Stage
          Tissue/Position (including subcellular localization)
          Reference
          embryonic stage 1 -- 4
          organism

          Comment: 0-2 hr AEL

          (Graveley et al., 2011)
          embryonic stage 4 -- 9
          organism

          Comment: 2-4 hr AEL

          (Graveley et al., 2011)
          embryonic stage 9 -- 11
          organism

          Comment: 4-6 hr AEL

          (Graveley et al., 2011)
          embryonic stage 11 -- 12
          organism

          Comment: 6-8 hr AEL

          (Graveley et al., 2011)
          embryonic stage 12 -- 13
          organism

          Comment: 8-10 hr AEL

          (Graveley et al., 2011)
          embryonic stage 13 -- 15
          organism

          Comment: 10-12 hr AEL

          (Graveley et al., 2011)
          embryonic stage 15 -- 16
          organism

          Comment: 12-14 hr AEL

          (Graveley et al., 2011)
          embryonic stage 16
          organism

          Comment: 14-16 hr AEL

          (Graveley et al., 2011)
          embryonic stage 17(i)
          organism

          Comment: 16-18 hr AEL

          (Graveley et al., 2011)
          embryonic stage 17(ii)
          organism

          Comment: 18-20 hr AEL

          (Graveley et al., 2011)
          embryonic stage 17(iii)
          organism

          Comment: 20-22 hr AEL

          (Graveley et al., 2011)
          embryonic stage 17(iv)
          organism

          Comment: 22-24 hr AEL

          (Graveley et al., 2011)
          first instar larval stage
          organism

          Comment: 42-44hr AEL

          (Graveley et al., 2011)
          second instar larval stage
          organism

          Comment: 66-70h AEL

          (Graveley et al., 2011)
          early third instar larval stage
          organism

          Comment: 83-85hr AEL

          (Graveley et al., 2011)
          third instar - uncleared gut stage
          organism

          Comment: indicated as puff stage 1-2

          (Graveley et al., 2011)
          third instar - partially cleared gut stage
          organism

          Comment: indicated as puff stage 3-6

          (Graveley et al., 2011)
          third instar - cleared gut stage
          organism

          Comment: indicated as puff stage 7-9

          (Graveley et al., 2011)
          prepupal stage P1
          organism
          (Graveley et al., 2011)
          pupal stage P5
          organism

          Comment: aged 12 hrs after collection as white prepupae

          (Graveley et al., 2011)
          pupal stage P6
          organism

          Comment: aged 24 hrs after collection as white prepupae

          (Graveley et al., 2011)
          pharate adult stage P8
          organism

          Comment: aged 2 days after collection as white prepupae

          (Graveley et al., 2011)
          pharate adult stage P9 -- P10
          organism

          Comment: aged 3 days after collection as white prepupae

          (Graveley et al., 2011)
          pharate adult stage P15
          organism

          Comment: aged 4 days after collection as white prepupae

          (Graveley et al., 2011)
          day 1 of adulthood | female
          organism

          Comment: aged 1 day after eclosion

          (Graveley et al., 2011)
          day 1 of adulthood | male
          organism

          Comment: aged 1 day after eclosion

          (Graveley et al., 2011)
          day 5 of adulthood | male
          organism

          Comment: aged 5 days after eclosion

          (Graveley et al., 2011)
          day 5 of adulthood | female
          organism

          Comment: aged 5 days after eclosion

          (Graveley et al., 2011)
          day 30 of adulthood | male
          organism

          Comment: aged 30 days after eclosion

          (Graveley et al., 2011)
          day 30 of adulthood | female
          organism

          Comment: aged 30 days after eclosion

          (Graveley et al., 2011)
          Vector of progenitor construct
          Description

          Additional low confidence modENCODE junctions identified by RNA-Seq analysis of cDNA prepared from polyadenylated RNA.

          (Graveley, 2011.11.3)
          Additional data
          Sample preparation
          Collection preparation
          Mode of assay
          Data analysis

          These junctions were excluded from the original exon junction identification analysis because they supported gene merges and were not cross validated by another data source. The full list has been provided to FlyBase, and only those junctions that come to be supported by additional evidence are made public.

          (Graveley, 2011.11.3)
          Cell lines
          Observed in
          Not observed in
          Comments

          Matches FlyBase Annotated Junction.

          Stocks (0)
          External Crossreferences and Linkouts ( 0 )
          Synonyms and Secondary IDs (3)
          Reported As
          Symbol Synonym
          Dmel:r5:2L:15523373:15523431:+
          (FlyBase, 1992-)
          Dmel:r6:2L:15523373:15523431:+
          (FlyBase, 1992-)
          chr2L_15523374_15523430
          (Graveley, 2011.11.3)
          Secondary FlyBase IDs
            References (2)