FlyBase Natural Transposon Report: Dmel\Ivk

General Information

Symbol

Ivk

Species

D. melanogaster

Feature type

natural_transposable_element

FlyBase ID

FBte0000608

Sequences and Components

Complete element (bp)

5402

(Kaminker et al., 2002)

Terminal repeat (bp)

Reference sequence

transposon_sequence_set.fa.gz transposon_sequence_set.gff.gz

Component genes

Ivk\pol

Ivk\gag

Sequence Accessions

GenBank Nucleotide - A collection of sequences from several sources, including GenBank, RefSeq, TPA, and PDB.

Sequence Ontology (SO)

Transposon type

non_LTR_retrotransposon

(Kaminker et al., 2002, Busseau, 2000.11.20)

Insertions and Copy Number

Copy number and comments

7 in euchromatin of Release 3 genome annotation, of which 2 are full length.

(Kaminker et al., 2002)

Search for

Target Site Duplication

Size (bp)

Orthologs

Curated drosophilid orthologs

Comments

Other Information

Etymology

External Crossreferences and Linkouts ( 2 )

Crossreferences

GenBank Nucleotide - A collection of sequences from several sources, including GenBank, RefSeq, TPA, and PDB.

Synonyms and Secondary IDs (8)

Reported As

Symbol Synonym

IVK

(Rigal et al., 2022, Saint-Leandre et al., 2020, Satyaki et al., 2014, Ohtani et al., 2013, Vujatovic et al., 2012, Brower-Toland et al., 2009, Malone et al., 2009, Brennecke et al., 2008, Kapitonov and Jurka, 2003, Kaminker, 2001.11.26)

IVK_DM

(Gunawardane et al., 2007, Kapitonov and Jurka, 2003)

Ivk

(Wierzbicki et al., 2023, Yu et al., 2021, Kordyukova et al., 2020, Kofler et al., 2015, Senti et al., 2015, Sytnikova et al., 2014, Czech et al., 2013, Kofler et al., 2012, Petrov et al., 2011, Deloger et al., 2009, Li et al., 2009, Ghildiyal et al., 2008, Kawamura et al., 2008, Brennecke et al., 2007, Bergman et al., 2006, Venken, 2006, FlyBase, 1992-)

Ivk element

(Khurana et al., 2011)

Motu 5

(Sun et al., 2003)

You

(Sun et al., 2003, Blumenstiel et al., 2002, Rizzon et al., 2002, Sun, 2002.10.20, Berezikov et al., 2001, Berezikov et al., 2000, Busseau, 2000.11.20)

ivk

(Guo et al., 2018)

lvk

(Pane et al., 2011)

Secondary FlyBase IDs

FBgn0043055
FBtp0017041

References (45)

Report Sections

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