FlyBase Natural Transposon Report: Dmel\Doc3-element

General Information

Symbol

Doc3-element

Species

D. melanogaster

Feature type

natural_transposable_element

FlyBase ID

FBte0001140

Sequences and Components

Complete element (bp)

4740

(Kaminker et al., 2002)

Terminal repeat (bp)

Reference sequence

transposon_sequence_set.fa.gz transposon_sequence_set.gff.gz

Component genes

Sequence Accessions

GenBank Nucleotide - A collection of sequences from several sources, including GenBank, RefSeq, TPA, and PDB.

Sequence Ontology (SO)

Transposon type

non_LTR_retrotransposon

(Kaminker et al., 2002, Kapitonov and Jurka, 1997-)

Insertions and Copy Number

Copy number and comments

9 in euchromatin of Release 3 genome annotation, of which zero are full length.

(Kaminker et al., 2002)

Search for

Target Site Duplication

Size (bp)

Orthologs

Curated drosophilid orthologs

Comments

Other Information

Etymology

External Crossreferences and Linkouts ( 3 )

Crossreferences

GenBank Nucleotide - A collection of sequences from several sources, including GenBank, RefSeq, TPA, and PDB.

Synonyms and Secondary IDs (7)

Reported As

Symbol Synonym

BcDNA:GH20809

DOC3

(Rigal et al., 2022, Saint-Leandre et al., 2020, Czech et al., 2008)

DOC3_DM

(Gunawardane et al., 2007)

Doc3

(Huang et al., 2021, Théron et al., 2018, Senti et al., 2015, Huang et al., 2014, Sytnikova et al., 2014, Li et al., 2009, Bergman and Bensasson, 2007)

Doc3-ele

(Kofler et al., 2015)

Doc3-element

(Wierzbicki et al., 2023, Karam et al., 2017, Kofler et al., 2012, Sienski et al., 2012, Pane et al., 2011, Kawamura et al., 2008, Brennecke et al., 2007, FlyBase, 1992-)

doc3

(Czech et al., 2013, Ohtani et al., 2013, Malone et al., 2009, Brennecke et al., 2008, Lerat et al., 2003)

Secondary FlyBase IDs

FBgn0046790
FBgn0063533
FBtp0017035

References (36)

Report Sections

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