FB2026_02 , released June 18, 2026
FB2026_02 , released June 18, 2026
Transcript: Dmel\Pif1A-RA
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General Information
Symbol
Dmel\Pif1A-RA
Species
D. melanogaster
Annotation Symbol
CG42599-RA
FlyBase ID
FBtr0301876
Feature type
mRNA
Associated gene
Dmel\Pif1A
Evidence Rank
Length (nt)
6324
Evidence Score
Genomic Location
Genomic Maps
cDNA Clones Consistent with the Transcript ( 61 )
cDNA Clones, Fully Sequenced
Exact Match
    Contained within the annotated transcript, internally consistent
      End(s) extend beyond the annotated transcript, internally consistent
      cDNA Clones, End Sequence Only (ESTs)
      Contained within the annotated transcript, internally consistent
      End(s) extend beyond the annotated transcript, internally consistent
      Sequence
      Sequence Downloader
      GCAGCGGTCGCAGGTGTCGCAGGTGTCTCAGAGATACTATATGAGCCCCGATATAATACCAAAAATCCTATAAGCAAACA
GCCAGTGAAGTGCACAAATCAAATGGTGAAATTACCACGGTGAAAACTATTCGCCGAGAGACGAAAACTTGAAAATTGCG
GCTAATTGTTTTTGTCAACCAAAATCGGCACCATACATCATATGTGGGAATAATGCATAAATACGCCTGACAATGGATTA
CTACTATAACCGAAGGGATGTCAAGATAACCCAACTCAAGAACATTGAGCTAATCAACAATACGAAAAATGCACATAAAT
CAGCGCTCGAGATGCGCACAACAATGAAGAGCAGTCAGCCGAATGGATTGGATGATGCTCCTACACGGATGAGGGCCCCC
GACGAGATGAGGGCCACCACTTGGATGACGACGCTGGTAGGCAGTAACTGCCATAGCCACAGCCACAGCCATCCGGCAGT
AGCCAAGTCGAAGGATCCCAATTCGGACACGGACTCGGCCTTGTCCTCGGCCCCGCCCTCCATCAGCCCGCAGCCGCCAT
CCAGCGGATCCGACAGCGGCGTGATTTGGCAAACACTGCAGGACCTGGACAAGTTGCAAAAGGAAGCGGAAATGTACCAA
AAGGAGAACGAACGCCTGCAGACGGAGGTGCAGCTGATGAAACAGGAGCTGGATGCCGCGGAAAAGGCGGCCATAAGCAG
GGCCAAGAAGCAGGCCCAGATCGGGGAGCTGATGCAGCGCATCAAGGAGCTGGAAGAGATGCAGTCGAGCTTGGAGGACG
AGGCCAGCGAACTGAGGGAGCAGAATGAACTCCTTGAGTTTCGCATACTCGAGCTGGAAGATGATAGCGATAAGATGGAG
AGCACCTGCGAGGGCCACTGCCAGAGTCTGCAGGATCTGCTGGAGCAGTCTGCCCAGCGGCTGGAGGATCGGGACAAGCG
CTGCTTGCAACAATTGCTGCAGTGCGTCCAGCAACTGGATCTGGATACCATGATGCCAGGCGATCAGAACCGGACGGAAA
CTCCCAAAAGGCACAATTCAACCCACAGTCACAGTCACAGTCACAGCCACAGTCAAAGTCACAACCACAGGATCGTAGCC
ACAGTTCAGCCGTATAGCAACTGTGCCACGCCCACAGCCCCGCCCACGCCAAGCAAGAGGCACTGCAACCAGGTGAGCTC
GTGGCAGAGCAGCAGCCTCAGCGAGAGCGGAGTGTTCGTAGAGTGCGATCTGCTTTCGAATCCCAATCCCATTGGCCACC
CGCATCTGCAGTTCTATCAGGAGAGATTGGAGCAGTTGGAGGGCAAGCTGCTGATCTACGAGAGCAGCGGCGAGACCCAG
GCACGGCACTTGGCCCAGAGACTGCAGCGGGAACTGCAGCTGGAGAAGGATCTCAAAGAGCTTGCGGACCGAGTGGAATT
GCTAATCGAGCAAAACGCCCAGTTGGAGGAGGCCAAGTGCGAGTTTGAGGAGGCCGAGAACGATACACGACTCCATTTGC
AGCGTAACGAGGTGGAACTTGAAATTCTTCGCCAGCGCAACGTGGAGTTGGAATTCGGCAAGGAAGCACTAGGCGCCAAG
TATCAGGATTGCAGGGCGGAGGTACTAATCCTTCGAGAGGATCTAGCGGCAGCTGAAACCCAACTGGAGCATCTGCAGGC
CGAAAGGAAGCAAGCCAGAAAGGAGCTTCAGGATCTGAGAAGATCGCTTCCATTACTCCTAATCTTCCGCTTGTTATCAC
TAGCCAAAATGGGCAACGAGGAATCCTCCCCGGGAGGCAGCCCCCGCCTCTCCTCGGGCTACACTTCTTCTATACACCAG
GATCGAGATTTCAGTGCCAAGATCCAAACAACGGAGTTTGACCTCGGTCAAGCGGGATTTACCGATTCCGGCGAGGAACG
GGAGATCGTTTACCTAAAGGAAGAGGTCAAGAGTCTGCGTAGCCAACTGAAAGAGCTAAATGCCCGGCACTACGAAGCCA
TGGAAACAGCAGACTCACACTGGGTAGATCTGGAGCAGCAGTACAAGGAGCGCGAGGAGGCCCAACAGGCCAAGGAGGCC
AGTCTCAAGCAGAAGATAGCCCAACTGCAAGATTGCCTCCGGGAGGATTCCCGAGCGGCGACCGAAAAGATCCAGCAGCT
GGAGGAGGGGGAACTGTCATTGAAGTCCTGCCTGGTCCGCATGACCAAGGAGCATCGCGACCTGCTCACCGAGAATCGCA
CTCTGCAGTGCAGCTTGGAGAGTCTAATGGCCAAAATGGAAAAGGAGGCGGAACACAAGATGCCCCTAACAGAGGCTCTA
GAAAACGAGAGGCGCAAAACCCAGGCACTGATGGATGACCTTATCTTTGCCAAGAAGGTGCAGCAGAACACCGAGGATCA
GTTGAGGCAGGAGACGGATGCTTTGCGCACCCAGATCTTCAACATCAAAAAGGATTACCTGCACATCGAGGTCACAAATG
GCGAGCTGAAAGAGGAGGTGGGCACGCTGGAGAACAAAATCCGCCAGATGGAGAACCAAATGAGGGATTCGGAGGAGCGG
GCGCGCTGCCTGGAGGACGAGCTGCGAACCAAGGACGAACAATGCCAGCTCTTGGAACGCAAACTGGGCGTTATGCCCGA
GGGCTACAGCCTGGCCGATGAACTCCATGATAGTCCTGCGAAGCGGGCCAAGAAGGATGAGGTACCGAGCCTCCAGGCTG
CCAGCCAGGGACTGGGCGTGGCCCTACTCGATCTCGAGGGTCGTGATTTTGGTCTACCACTGCACAAGGACTTCCAAGCA
ATTGCCTGCAGTGTAAAGCAACTGGCGGATACCCTTCTCTCACAGAGTCCGTCCGAGAATGCCCGGCTCTGATGTACATG
CAGCATGAGCGACATTCCGACAGCGACCCCAACTCCCGCCATCAACAAACCGAGGCATCCCACATGAGAGACCACTGGAA
GCCGTCAAAATCCCAACAGTCGCAACAATCTGATCGTGTAGACCCTCATGACAAGCCATCGCAGACGGCGGTCTCCTTTC
TGCAGAAACACCACACGCCTAAGAACCCGGAATCGAAGGCTAATCCAGATGATGGGGCGTCCTGCTCATGCACCGCAAAG
AGGTCCAAGTCCGCCGATCCACCAGCGGTTAAAGCTCACACCTGTGCATGCAACACCGATCCAAGTCCATGTGGACTGGG
TCATCAGGAGAAATCCAGTTCGAGGAAGCCCTGCTCCCAGAAAACATCGGTTACGGAACCAGAGAAGGCTTCCTCATTCA
AGAGTGCTATAACAGCGTGTACCAAGGAGCTCCTCGATCCCTGCACTTGTGGCGCCCACCCACCATACTGGGCTGGTCAA
AGCAACTTGGTAACCGGACCATCCTACAGTAGAGCAATGGACCCCTCCTCAAGCACTCTCGCTCCCTTGCATAGACCCGG
AGCATCAAAAGGCAGCTTTGGTCGATCCAAGAGTTTGGCCAGTCTGCCTAGTAAATCTAATCCGCCAACTCAGAGTGGCG
TCACTTGGTTGTCGGCTTTAAAGGATCCGGAGAGTACATGTTGCTCTTCCAAAGAGGACGAACGTCCTGCATGTACCTGC
AACGCTACCCAGACTAATCAGGATCCTTCTATGAGTTCACTTCCTCAGAGCCATCCCAATTATCGCAGTATGACATCCAA
ATCAAGTAATTTCAGGGCGCCAAACCCGCGCAATCAACCCTCCTTTGGGCCAGGCGATGAGACCTCAGCAACCACACGAT
CCCAATCGATTGTGGGTCAGGTCACCTGCCTATGCGCATCGGAGCATCAACCCACCAAGGCCTTTGTGTCGAGCCTGGCC
GATCGGGAATGCCCAAATGAGATCCAGATTGCGCCATGCCCCTCCACAAGAATACACCATCCATCCGGGTTTGCCCAGTT
CACCGATTGTCAGAACTCTCAAGGCGACCCCAGTACCTCTTTCCGTTCTAGGAAAGTGAGCGTTAAGGGTCAGGAGGAAT
TTTGTGACTGTGATGCTTCTGATAACTTCTCCGAACTGTCCGATCCCATCCAGACCAGTCTTCATACGCACAGGAGTCTT
TCCGGGGGTAGTTGCCTGTGCAACGACGATGCAGATCCTCCGAAGGAACCCGAAAAGGCTACGTGTGTCAGCAAGCAGTG
CCAGTGCTCTTCGAATGACGAGCTTCAGGGGATGCAAAGTGCCCAAGCGGGTACCGGCTATCAGACACCAGAGGATCTTT
GTGGAAATAGGGCTATGGCCTGCTGTTCTCGTAAGGAACGCATCCTGATGCTGATGGAGAAACTGACCAGTCCTGGTTGC
GATTGCGGTATATCTCGCCCCTGCCTGACCCAACAACTTTTCCGGGAACTAACACTACTCCTGAGATCAGAAAAAGATGA
TGCAGTTGCACCAGCGGATGAAGCTAGCCCACCGTGCCTAACCTTCGATGAGTGCTGTACGGCCCAACATGCTGGCAATG
GGGAAGGCGATCCAGTCGAAAAACCCCCGTCAAAGAGAGAGCTCCAACGAGTCGAGTGCTTTCATCAACTGGAGGAATAC
CTCTGCAAGTGCTTCCTGCCGCCGGCAGAACCTCAGATTCCTGAGACCGATATCTATGCTTTTGAACTAGATCCGGACTT
TCCACCAGAACCTGAGCCAAAATCTCCCAAGGAAAATGACAACATGCAACCTTGTCAGTGCCCGGAACAATTCTTTGACA
TTGGAAATGCACTAACCTGTTCGGGTGATGGCTTGGATGATGACTTCTTTCGTGATTGTGAGGATGACGAGGAAGTAAAA
AAGTTCGAAAGTAAGGATGATGGTAAAGCAACCACGGAGCCGGATCTCTGCCAATCTCTTAAAGCATTCATCGACAAGGA
ACTGCAAGAAATTCTTGCGGAGGAGGCCAATAAGGAAGGCGAGGAGGTAGAAGAAAAAACTCCTAGCACAGTACTAAGGG
AAATCTGTGAGAGACCCACAACCGTGGCGTCACCGGAAGAAGAGGAGAAACCAGAACAGATTGAGTGTCCATTTGCTGGC
ATGGTGTCCTGTCCTCCTTGGACCACACAGCAAACAGACTGGGCAGCCTTCCCCTACAACTTAGATCCCTGTGCGCAAAA
GGAGTCACCTAGCCCGGCGCCCCGGGGTCCACGTACTGGGCTATTGCCCGAAGGACCTCTGTCACCCGATATGAGGAACC
TCTGCGAGCAGCTTTTGCGAAAAGCTCTTAAGGATTGTGGTCTGTGTGGTGGTGACGATGTGTACTCCTGCGAGGACGAT
GTATGCGAAGAGTGCGCGCTGAATTGTGAGGAATGCCCGGAAGATTGCCCGTTGGAAAAGTGCGAGGAATGCGATGATGA
GTGTCCCCCAGAACAACAAGGATGCCTATGCTGCCACTGTCGCGCTCTCATATGCGACGAGGAGTGCAAGACGGTTGCCA
ATACCCTGCGCTCCGGAATGTGTGATCCACTCTGCGAAATGAAATACTTTATAGACTCCATCATCGTTGATATGCATGCC
ATGGATTGTGTGCTCGGCAACAAGAAAGCGAAACCAAAGCACCTTAAGGCTACAGACTTGACCAACAGAGGTGGACCCGG
CGATAGTTTTCCCGTCAAAATTAAGAGTGTGTGGCCATTGGGTAACACCGCTCTCTACGTCCAATGGCAATTGGAGGACT
GTCGCGCTGTAGCAGGATATGAGATTTACTTGGATGGGCATTTGACGAACCGATTTTACAGTTTTCGTCACGAGGCCGGA
GTTATTACCAATGCGGATGTGACCAATCCGCACCAGGTTGTGGTGCGCGCCGTAGCGGTGGGTCAGGAGTTTCCCGGCGA
GGGTCCGGGTAAGGATGCGACCCAGGAATGTGGCTGCCAGGCGGTGGCACTTGCTCATCCCGAATTGAAGGCGGGAGCAC
AGAGGCCGTGGTCGCCCAGTCTCTACTATTATGATCCCAACCAATTGCCGCCGGCGGAGGACGTGCAGCCGTGCTAGTCA
TGAATCATATGTATATCATTATATCGAATATCGTCGGATATCACCGTTATCGGAACAAAGGAGCTAAACGCTCCCTCACT
TTTTAGCTTGTACATATAGCGTATTGATATGTAGTGTTTGTTAAGAGTTCTTTATCTGGAGGATACCAATTGAAATCGTC
TGTACGTAGTGCTTTGCATAGTGCCTTAAATCGTAATAGTATATCGTAAGCAAATATCAATGCATTGTAATGGAATTGAA
AGCAGGTGGCTTCATTCCGATGGCACGTTTGAGTTCACCAACACCAAATTCACTTTAAATAAATGAATCTCATTGTTAGA
GATG
      Other Products of this Gene
      Other Transcripts
      Name
      FlyBase ID
      Length (nt)
      Pif1A-RG
      FBtr0332500
      7761
      Pif1A-RH
      FBtr0332501
      7694
      Pif1A-RI
      FBtr0332502
      3253
      Pif1A-RJ
      FBtr0433507
      7780
      Polypeptides
      Derived from THIS transcript
      Name
      FlyBase ID
      Length (aa)
      Pif1A-PA
      FBpp0291090
      879
      Derived from OTHER transcripts
      Name
      FlyBase ID
      Length (aa)
      Pif1A-PG
      FBpp0304776
      1226
      Pif1A-PH
      FBpp0304777
      1264
      Pif1A-PI
      FBpp0304778
      796
      Pif1A-PJ
      FBpp0390639
      1264
      Comments

      Dicistronic transcript; alternative monocistronic transcript(s) exist.

      Transcript terminates at site supported by polyadenylated cDNA.

      transcript_exception: dicistronic_mRNA

      External Crossreferences and Linkouts ( 1 )
      Crossreferences
      RefSeq - A comprehensive, integrated, non-redundant, well-annotated set of reference sequences including genomic, transcript, and protein.
      Synonyms and Secondary IDs (2)
      Reported As
      Symbol Synonym
      CG42599-RA
      Pif1A-RA
      Secondary FlyBase IDs
      • FBtr0091714
      References (0)