FB2026_03 , released September 17, 2026
Transcript: Dmel\vari-RF
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General Information
Symbol
Dmel\vari-RF
Species
D. melanogaster
Annotation Symbol
CG9326-RF
FlyBase ID
FBtr0335501
Feature type
mRNA
Associated gene
Dmel\vari
Evidence Rank
Length (nt)
2379
Evidence Score
Genomic Location
Genomic Maps
cDNA Clones Consistent with the Transcript ( 33 )
cDNA Clones, Fully Sequenced
Exact Match
    Contained within the annotated transcript, internally consistent
      End(s) extend beyond the annotated transcript, internally consistent
        cDNA Clones, End Sequence Only (ESTs)
        Contained within the annotated transcript, internally consistent
        End(s) extend beyond the annotated transcript, internally consistent
          Sequence
          Sequence Downloader
          GAGTCAGTTAGTTGCGAACAGTGCTAAGGTGAGGTTCACATTCCGGTTTGAAACGCGCGCTTCGTTGGTTTCGGCCCATT
CGAATGACTGAATCCGACCGAGCCGCAGCCAGTGCCACTATTCCTGCCCGCTCATCTGAACAACAAGCCCATCTGCGACG
ACATCATCCGCAAGTTCTCACCCTCGAGGCGCCTGGAGTCGCGAGAGCTCGCCAAGCTTCTCGCCCAGCCGCATTTTCGT
GCTCTTTTGCGCGCCCATGATGAGATAGGAGCACTCTACGAGCAACGACTTAAAGCTGCCGGGGGATCCACCAGCCAACT
AGAGATCGCCAGCCAACGCCAAACGGGAGGCTACCTGTTCACCGAGGACGTCCTCAACACCAAGATGCCAGTGGAGACCA
TCAAGATGGTGGGTCTGCGCCGAGATCCCAGCAAGCCGCTGGGCCTGACCGTCGAACTGGACGAATTCAAGCAGCTGGTC
GTGGCCAGGATTCTGGCGGGCGGGGTGATCGACAAACAGAGCATGCTGCACGTTGGCGATGTCATCCTAGAGGTGAACGG
TACGCCCGTTCGCACTCCCGATGAGCTGCAGGTGGAGGTGTCGCGGGCCAAGGAGAATCTCACCCTCAAGATCGGGCCGA
ACGTGGACGAGGAGATCAAGAGCGGTCGCTATACTGTGAGTGGGGGTCAGGTAAAACAGAATGGCATCGCGAGTCTCGAG
ACGGGCAAGAAACTGACGTGCTACATGCGTGCCCTTTTCACATACAATCCATCCGAAGATTCCTTGCTGCCATGCAGGGA
TATTGGATTGCCCTTCAAGTCGGGCGACATTTTGCAGATCATCAACGTAAAGGATCCCAACTGGTGGCAGGCCAAGAACA
TTACTGCCGAATCTGACAAAATTGGACTCATACCATCCCAAGAGCTGGAGGAGCGGCGCAAAGCCTTCGTGGCCCCCGAG
GCGGACTACGTTCACAAGATTGGCATTTGCGGAACAAGAATCTCGAAGCGAAAGCGCAAGACCATGTACCGATCTGTGGC
CAATTGCGAGTTCGACAAGGCGGAGCTGCTGCTCTATGAGGAGGTCACGCGGATGCCGCCGTTCCGCAGGAAAACCCTGG
TTCTCATCGGTGTTTCCGGGGTGGGAAGACGTACGCTCAAGAATCGGCTGATCAACAGCGATGTGGACAAGTTCGGAGCG
GTCATTCCACATACCAGTCGCCCCAAGCGCGCCTTGGAGGAGAACGGCAGTAGCTACTGGTTCATGGACCGCGAGGAAAT
GGAAGAGGCCGTGCGGAACAACGAGTTCCTGGAGTACGGCGAGCACAATGGCAATCTGTACGGCACGCATTTGCAGTCCA
TCAAGGATGTGATCAACAGTGGGCGCATGTGCATCCTGGATTGTGCACCGAATGCCCTGAAGATCCTGCACAACAGCCAG
GAACTGATGCCTTTTGTCATCTTTGTGGCAGCGCCTGGCATGGAGCAGCTCAAGACCATCTATGCGGATCGCAGGGCCAC
GGGCTCCAACCGGAATTTATCTTTTGATCGCCAGAGTTCCATAAGATTCAGCTCCAGACGCGCCCGTACGCTCGAGTCCC
TAGCGTCGTTGTATGAGGACGACGACCTTGTCGCCACCGTCGAGGAGAGCAGCTTCGTCCAGCGCAAGTATGAGAAATAC
TTCGACATGGTCATCGTGAACGAGGACTTCGATGAGACGTTCCGCCAGGTGGTGGAAACGCTGGATCAGATGAGCCACGA
GGAGCAGTGGGTGCCTGTCAACTGGATCTACTAGAATCCCATGACCCTTTGCAATTGCGCCTTTATGCATATTGAAGAAT
ATATACTATAAAAATCGAATGCCTATCATCACAATTAAAGGGATAATTCCAGTAATTGAAGCTTAAACTCGCAACACAAT
ACAAATTTAGCGAAGAGCATTTAAAACGCTAGCGATTTCAATATTTATTGTTGATTAGACGTGTTTTGCTTGAGGAATGT
AATGCGTTTTATTAACTATGTTTATCTCAATTACTGTCATTTTCCTCTTTAAATATAAATCATGTATATATGCAATGTTT
GTATAAGTTGAAATGCGCCCTCCGTTTACAATTCAGTTTTCCTTAAGTATAAGCCTAATTTTACGAAACGAATTCGTCCA
TTTTACCATCTCTTGTTTTATTTTTACAAATAATGAATGATGTCAACGCATATCTCTTCAGTTTATTATTTTAACGAATC
TCCTCAGTACAACAACCTTCTGCCAATATTTTCGTGTAGTTTTTAGATTTGTTTGAATAAAATGTGTAAGTTTAACGAAC
TAGTTAAATGTATTGATGTGGAGTTAAACAAACGAAATACGAATAAATTTGGCTCAAAG
          Other Products of this Gene
          Other Transcripts
          Name
          FlyBase ID
          Length (nt)
          vari-RB
          FBtr0089947
          2610
          vari-RC
          FBtr0089946
          2320
          vari-RD
          FBtr0089945
          2717
          vari-RE
          FBtr0335146
          2535
          Polypeptides
          Derived from THIS transcript
          Name
          FlyBase ID
          Length (aa)
          vari-PF
          FBpp0307469
          469
          Derived from OTHER transcripts
          Name
          FlyBase ID
          Length (aa)
          vari-PB
          FBpp0088886
          636
          vari-PC
          FBpp0088885
          469
          vari-PD
          FBpp0088884
          615
          vari-PE
          FBpp0307145
          611
          Comments

          Short protein isoform supported (Western blot, FBrf0215898); alternative promoter, resulting in downstream translation start.

          Transcript terminates at site supported by polyadenylated cDNA.

          External Crossreferences and Linkouts ( 1 )
          Crossreferences
          RefSeq - A comprehensive, integrated, non-redundant, well-annotated set of reference sequences including genomic, transcript, and protein.
          Synonyms and Secondary IDs (1)
          Reported As
          Symbol Synonym
          vari-RF
          Secondary FlyBase IDs
            References (0)