FB2026_02 , released June 18, 2026
Transcript: Dmel\lncRNA:cherub-RC
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General Information
Symbol
Dmel\lncRNA:cherub-RC
Species
D. melanogaster
Annotation Symbol
CR43283-RC
FlyBase ID
FBtr0345159
Feature type
ncRNA
Associated gene
Dmel\lncRNA:cherub
Evidence Rank
Length (nt)
8311
Evidence Score
Genomic Location
Genomic Maps
cDNA Clones Consistent with the Transcript ( 10 )
cDNA Clones, Fully Sequenced
Exact Match
    Contained within the annotated transcript, internally consistent
      End(s) extend beyond the annotated transcript, internally consistent
        cDNA Clones, End Sequence Only (ESTs)
        Contained within the annotated transcript, internally consistent
        End(s) extend beyond the annotated transcript, internally consistent
        Sequence
        Sequence Downloader
        TTTCATTTCAATCTTCAAACGCTGAGGATCAACAGCAGCAGCAGCACCAGCAGCAGTAGGAGCCGCACAGGAGCAACAGA
AGCACCAGGATCGAGGACTCCTCGCAGCGCCATGTCCAGGCGGCGCTAAGGAGGCTGTTGCAGCATCTCCACACCGACAG
AAGAACAAAATCAACCAAATCCACCGCAGCAAGCCCAACAAAATTCAGTCGAAAAAGTTGCAAAAATTCTACCGCCGAAT
GTCAGATTAATTTGTATAAAAAGAAACCCAAGTACCAACAAGCCAAACGAACAATTTGCGAAAATTGTTAATGTGAAACT
TACACATTTTCGTGATATGGTTAAAGTATAACATAAATACTAAACACAACAAGGCAAAAGCCTAAGTTTAAGCAAAAATT
TAACCAAATTCAAAAAAATCAATGTCAGCGAAATAACACATGAAATCAAAGCATAATTGAAATATTTTCACCACACACAA
CCACGATACCATCTTGGATTAATAATAATTCCAAAAATAACTAAAAACCAAATTCCAAAGTACCATCGAAAATTAAGGAA
AGCTGATATCCAAGAAAATTGTAATTCGCCTGAAACCAATTGGAACCCCAGAATCTGAAGAAAGGAAAGCTATTATGGAT
CGAGCAGTAACCATATGTCTTGCATCCGGATCAAACTCACATCCCCATCAACGAAATTGTTATGAAACTCAACAAAATTC
TTAAGTGTTTACTGCTCATAATTCTCTACTGCAATGACAATCTCGCCAAGAACGAAATTCAAAATCCAAACTGCTATCAA
AATCGAATCGAAATTCCCAACCAGCCAAACTGCCAGTGTCTTAAGCAACTGCCACGCCCCGTCGCAGCCCAACGAAGAGT
CCTGTGCCCCAAGCAAAAAATCCGGCCAGCAAATCACACCGAAATCCGACAGAAACTGCAAGGAAGGAAACCAAAATTCA
AGTCCAGGCGCAAACCAAATATCCAAGTACACTTTTGCTGGGGCCAAAGCCGACAAAGCTGATGATGATGAACTCGATGG
CGAGGAGAAGGATCGAGCATTTGACGGCGAAAGGAGCAGAAGGACGAAATGGAGCAGCGACGCCGACGCCGGCAGAAGCA
GCAGATAATCAAGAGAAAGGAGAAAGCTGCCCCGCCGTAGATATCCAGCTGAATATCTAAGCAGGGGCAGTGATTTACCC
CAAGCAGCAAAAGCCACCCCTCGACAGGAAGCACACACACATACAGCCCACATCCTGCGGCGAATTCACAAACAAGCACA
CACCGAGACACAGACAGAGAGAGAGAGAGTGAGAGAGAGCCGAAGCAGCAGCAAAGAGAGAGAGAGCGACTGAGTGCCCA
CCTTTTACTCTCCGAATTTCGCAAGTATGTTTTGACTACTGTTTAGAATCTAATTTCAAAAACAGATTTGAGTAACCCCA
CTGGAGCCTTACTAAGTAAAATTCCAAAAACAAAGAATTCCAATCACATTTAAAAGTATGCAAATTCAAAAACCTAAAAC
CGAGCCAAAGGTGAGCCTCATTTCACTCTCGTCAGCAGCCCAGAAGCAAAATTTCAAAATCCCACCGACACAACTCAAAA
TCCAAAAACGAACTCTTCTTCTACGGCATCGCAGAAGGCTTCATTTCCAGAAGGCAAAGAAAGTATCCCTGAATATCTTA
TTTTCGTTATTCAACCAAAGAGTTCGCCCCTGCCCCGCCAAATTCCACACACACAATGCAATAGTTTATCATTTTGTGTC
CCAAAACGCAAATCGAATGAATACAAATTCCAAATTCGCGTTTCGTCATTACAAATCTTTAGTTAAACCACAATATATTA
ATGCAAAAATCAAGCAAATGCCAAAAGACAGTTTCGCATGGCCCAGAGCTTTAGGCGCAAATCAACCACCCAGCCACACT
CACTCACACTCACACACACACACACACACACACTTTAGGAAACACACACACACGCGCAGGGGTATGCTCACCCATACACT
CACCCATCAAACACTCACACCCCTTTGGCAATAAAATGGCTGCAAAGGAAGCTGCTTCTACGATTCCCAAGAAGAAAAGA
AATAGCCTGACCCCCCAAAAAGTTCGATAGGAAAATACAACGAAAGCGAGTTATAGGTTATAGGTTAGCGAAAGGACTAT
AGCCAAACCAAACTCCAGTTAAACAACTCAAGCATTTCTCAGCGCTTTCAATATTTCGTTGACATTTTCATTAAAGAAAG
CAAAGGCGTTGCGGCATTATTTAATCACACGTTTTTGAAAATTTCAAAGAAATATTTAATGCGCCAGAAGTGCTGATAGA
AATTTGTACAGCAAACGACAGTACAAAACCCCAGGAAGTCATTTAAGCCACCCCCAACCCTTAAGTACTCAAAAATGTCT
TCTGGTCATTGACTTAGAAACAACTTCGACCGACCAAACCAACATTCAAACGCAAACCTCATTACGATTAGTTCAGACAA
ATCGAAATCAATATACTGCCAAGCTTATTCTAAATACTACATTCCGGTTAAAAAATAGAATCATTTTTAAAATATCTTTG
GTTTATTTACCCACGCTTTAAATTTACCAAAACGCGATATCACAACTATTACAATCACGAAATTGCAAAAATCGATCCAA
ATTCAAAAAAAGTTTTGCTTACACTAAAAATAATCGAACTTTATTATCCAAATCAAGCCAAACAAATTAAATTCATGAAA
ATCTGTAAAATACAATCTCAAAAAACTTTGTTTTTGAAAATATTTTTTCAAAACTTCTTATTCAAATTCAACATCAAAAC
AACTAAATTAAAGCTCATGTATTACTCCTAAATTTAAAAAGAAAATAATTAAATTTAACTGGTCTACTAAATTCAAAAAT
AACACATTTTTAGTAAAAATGAAAAAATTACATTTTTCCGACAACACACTGAAGAATTTTTAAAAATATTTAAAAAATCC
AAATCGACAATAATTTTATTATTCGCTATGCATCATGAAAATATAAATCACGCATCCAAATTCAAAAATAATATTCAATT
CAAAAAAACTACACTTAAATTTTAAACCAAACTCAAATTCTAAAACAATATAAGCCAACAATTTAAAAGAATTAAATTAT
TTTTTATGACAGTACTGGAAAATATAATGCACACACTAAAAATAAATCTTAATTTTCAAATTTCTGACAAAATTCAAAAT
TTAAAATTTAAGAAATCATCCAAAAAATTTTTGTTGTATAAAAATTGATTGCACGATAGAAATTCAAAATGAAATAGAAT
CAAATAATTCAAAATCCGAAAAGGTTTTACTATAAAATCAAAGAGCATAAAATTGACAAAATTCAATCAAAATCAAACCG
TTAAAAGTCACATAAATATCTACCAAAATTCAAAATCAAAAAAGAAAAACTACCAAATTAAAAACTGCAAAATTAAAGAT
CAATTCAAATTAAGATTACAACCATATAAAATATCTAATTCCAAATCAGCAAAATGAATTATCGCGTAATTCTAAATTAC
AAATGTAAAAATCTGTTTCAAAATCAAGCACATAAAATTAAATTCAAAAGCTATTTATTGTAAATATCATAACCAAATTC
CAAATCAAATCAAAATTCTAAAATCATTATATCATTGCAAACAAAAACATATCAGCATATCAAGCAAAGAAATGTCAATG
TTTGATTATCTATATATTATAAAAACTCAAACCAAGAAATACATCAAAATCAATCAAAAACCGCAGTTAAAAACAAAATA
CAAAATTTATTTCTAACTTATTTAAATTCAAAAAGAGCAAAAACAACAAGAGCAAGACATTATACGAACAAATATTTAAA
AGCAAAAGTTCGAACCGAATTCAAAATCAATATCCCAAATAATTTAGTTGAGTTCTTCAAAATTGTTTAAAATTTTAATA
TTTCTAAAAATTTATTTTTATAAAATTTATTTTCAAAAACACCAAGTAAAATGTCAGATTCAAATATTTTAAAAATCACT
GCCTTTAATAGTTAGTTTCATTTCATGAAACTTCATGTTTCATTCAAAACAGAGACTATTCTTCATTAATTACAAATTTT
ATGAAATTATTTCACAACAAGTTAAAAAAAAATAACAAAAAGCCCTATTGGAATAACAATAAAATTAAAATTTCATATTA
TACTCTTAATTACACAGTTATGAAAATAGAACAATCAAAACACACATTTAGTTTCTAAATTTGAGTTTCAAAAAGAAACA
AAATGAAGATAGCTAGTTTCATAAATATTTATTCAGACTGAAAACTATGAACTACAACAAAAATTTGTAATGATTGCAAT
TCAAAAGGCGATGAAACCAGTTCTGAGAAAATTATATATATAAATTGACAAAAGATTTACCGTTGTAAATATTCAATCAA
ATTAGAGTCTTAATGCATCAGGAAATTTTTGGAGTAAAGAAACATTTTGAATTAAAATTCACTATTTATGCAATTATGGA
AACGTTTTATCCGGTAAAGAACGGAACAAACCGCAATACAAAAATCAAAAATTTAGAAAAAGTATAATTAAAACAAAAAC
TGAATATAATTTAGATCAAAAAAATTCACTTTCTTTCACAACTTTAGAAACTTTTCTTTTACATTTCATTTACATTATTA
GTTTTTCGAAATATTCTCGTAAGGTAACTACTTCCAGTCTTTTTTTTTAAATTTAGACTCCTTTTCAAATTATTTAGCTC
AATTTAACAAATTTAAAACATGTGCCACCATTTTACAATTTGCTCAATACTTTTTCACAATTAAAATGGTCTAGAAAACC
AAAATTACCCGATTTGAATCTCAAAAGAAATCCAAATGCCTTAAATAACACAATTTATACGTGCATTCTACAAAATATTA
AAACCAATCATATTAGAAATATTATTCATTTTAATCTAAATTGTATTAAATTTCTTTTATTCTTTTATTAAACAAAAAGG
TTTCCCTTTTCAAAATAATAATAACATATCTAAATTACTTTATTTTAGAACCAGACAAACCAAATCCAAAAATCCAAATT
CAACTTTCGGCTCCTCTGGCAATCATCAAATTTGAAAACCGAAAACCAAAATTCAACTCAAAATTGAACCACACCCCGGC
CACAAAATTCAATATTCAGACCAAAATTTAATTTAAAGCATTTATCAGACCAGGTAATCAAAACTCTATCCAAAATCACA
CAAAGCAGCATAGTATTTAAAAACAATCAAAATGACAATAAGAATAAGTGCACATTCAAAAGTCCAACCAAACCAATGCC
AAATTAAATAAGTCAAAAAAAAAAAAAACAACAAATCCTGTTCAAAAGTCGCAGCATTTCGAGGAACCTTCGGTGCATAA
TTATTACCACATTAAGATGATTAAGTATTCGCAGCCCACCCATTAAATTGAGAAAACAAAACCGAGCCGCCAAAAATTCA
AAAACAAGAGCGAAAAAAAGAAGTGCAGCTAAATTTCAAAAGCCAGTATTATAAATTACAAGAAACTGCGGAAGTTTTAA
TGCGACAAATGTCAGGAGCAAAAACGCAGGCCGCCGCCGAAAGGCACCAAAAATTCCGAGCTGGAGCTGGCGAAGAAGAC
GCGACAGGAACAGGATAATGGTTAGGGAAACTCCTGGCAACTTTCTGGCCAAAATCTTAGAAATGGCGGCCAAAGGGCGC
GGCGAGCGGAGAGCGGCCAAAGGGCAGATAAATCACAGCGAAACAAAACAATTCCCAGCTCTCGTGAAAATTCCAAATCC
ACAAGAACAAAAACTGAAACCGAAACTGAAACTGAATCTGAATCTGAGAGCACTGTATACTGTAAACTATAACAAAAACC
GAAACCGAAACAAAAACAAAGGCACGCGATTTCAAAGAAGAGGGTTGCTAGACCAGTAACCAAAATCAGTTGAGCCGGCA
AAATCAGAATCCCAGGCCAGCAGTCCAGTCCAGTCCAGTCCAGTCCAGTCCAGTCCATACTCAAAAGATTCCACGATGAC
CATGACCACTTTGATCCGCCCCCAGGAGAGACCGAATCCTCAAGCCCATTACTTTCGCCCGAAGGCCGCCGCACAAAAAT
CACAAATTTGAAGACAAACTGCAACTTAACCCAAATCCAATTCGTAATCAAAATCATTATCAAAATCAAAATCAGAAACT
CAAACTCAAACTCAAAATGAAGGCATCAGCAGCATGGCCAGCAGAACCGCAACTTTAAATAATATTCGGCACGAGTGTCA
CGAGCACAGCTAAAACACTTGAAACTCGAAACTTAAAACTCCAGGCACCCAAACTCCCATTCTGAAATTGTGGTCAGACT
TGGTTTCTTTGGCAAAAGTTCGAACCATCATCATAGCATCATGCAGCTGAAAGCACATCAAACAAAACTCCAAATTTATA
TAAACTACTGGCAATAGCCGAGGTCGAGGCATAATTGCCATCAATAAATAAAATATGGCTGGCATGAGCATGAGGTCCCC
TCATAAGCAGACCCTCAGCCAAGAAGACAGGACACCCAATCCGAGCAAGAGACCCCGACCCATCCTCCGCAGCAGCCAGT
CAATGGCCACTAGACAGCAGAACGTTTTGATTTATAAATTCATGGCAAAAGTTGCCCGGCCAAGTGGCAGCCGCCGACTA
TGACGACACATACACCGACTAACTATCCAACCATCCAGCCAGCCAGCCATCCAACCAACCAGCCAACCAACCAACCAACT
TACCAACCAACCACCCAGAGACTTGGCAAACAAGAAACTGCAAAAACCGTCTTATGAAATTACACATTTCCGACTTGTAC
TAGTAGAAAATCCCTCGAAATCACCCAAGCCGAAGCCCAAAAAGAAAAAACCAAATTCAAGCAAATTCAAGCAACCAAAT
TTACAACGAAGTAGCAGTTATAGTAGCTCCAACCTCCCCTCCGACAAATCCGGCACAGAAATTTAGTTATGAATTTTATT
TACACACAAGAACATTTCTAGAGAGCAGCATCTTCCCACCTTTGGCTAGTAGGACTACGATAAAACAAAAAAAATTTAAA
GAACATATTTACCAAAAAAGTTTCGGGCAATTTGGAAATTTGCAAAAATCATTGAGACAAACGCGAGAAGCACCCACGAA
GAGTAGCAAATGGAATCTTGTACAATAGTTCTATTGAAAGACATTCGAAATGAAAGAAAAGCAAAGAAAGCTAGAAAAGC
ATATCCTTCCCGGCCAGATCTACGCAAAGAGAGAGACAGATAGAGATAGATAGAGAGAGACAGCCAAACAAAAGGACAGG
TAGTATGCGAGTATAGCATATATGCATATATTCCATAGCCAGAACAGGAGTAAAAGGACCACAATCGCGAAAAGTTAACA
TTTCGGACACAAGGTTGGGGATACCTAGTGTAATTGCTTAGACTTAAGAGTGTTGCACTAAGCCAAGTGCAGTGCCGACT
GACCCCGCCCACAACAACGCCCCCCGTTGAGCAAAAAAAAAAAACCGTAGATAATGGAAATTTCCCATCGGGCAGACCAA
AAAGATACATCTTAGGCCTCTTTAGACCCAAATGAAACAAAATGAAGACCTAAAGAAATGAAGAAAGAACAGGAACTACG
ATTAAGCGCGAATTGTACCACGTAACTACACTTTGTATCCCCTTAGTTAAGCTAAAATTATTCGAGATATATACGAGAAA
TTGCACAAAAAAAAAACGCACAAAATGCTAAAGAAAGGAAAACTAATGTAGATAATGCCAATCCTTTTGTCTAAAATTTC
AACTCTTGGAAATTTCGCAATTGAATTGCGGAATATTTTAGACGAAACGATTGCCGCATTTTTTATGTGATTTTATACAC
ACAATTCATTTGCACACAGAAGTATAATTATCTATATTTTATTTCGATAATCTCCCTACACTATCATTATCGTCGTCAGA
TTCAATTTCTTATATTTTTTTTTTCGACACATGTGATAAGCGAAAATGTTAAGCAAAACATTGGAAAAACGAATTTCAAC
CAGGACAAAAAAAAGAACCAAAATCAAAACTGTGTTAATCAATCTTTGATAGATCTACAAAAAAAATTTAAGTTTCAATA
AGTAAGCTAAAAATACGAGTTTAATGTATACAAAAGTATCATTTGGCACAAATCCATCAAAATCACAATTAATCCTTTAT
ACGAATATATATTATTTAAATTGTTATTTCAACCGTACAACCTCAAAAACACATAAATATTGTAAACATTAGAAATAGCG
AGATTAAAAAAATACCAAACAAAAATCAATAAAATTGTACAAGCCAATTTGCTCTAATAACAAAACAATAC
        Other Products of this Gene
        Other Transcripts
        Name
        FlyBase ID
        Length (nt)
        lncRNA:cherub-RA
        FBtr0306728
        3478
        lncRNA:cherub-RB
        FBtr0306729
        4774
        Comments

        Unconventional splice site postulated (GA-AG).

        transcript_exception: non_canonical_splice_site

        External Crossreferences and Linkouts ( 2 )
        Crossreferences
        RefSeq - A comprehensive, integrated, non-redundant, well-annotated set of reference sequences including genomic, transcript, and protein.
        RNAcentral - A comprehensive ncRNA sequence collection representing all ncRNA types from a broad range of organisms
        Synonyms and Secondary IDs (3)
        Reported As
        Symbol Synonym
        CR43283-RC
        lncRNA:CR43283-RC
        lncRNA:cherub-RC
        Secondary FlyBase IDs
          References (0)