FB2026_02 , released June 18, 2026
Transcript: Dmel\CG42238-RE
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General Information
Symbol
Dmel\CG42238-RE
Species
D. melanogaster
Annotation Symbol
CG42238-RE
FlyBase ID
FBtr0347554
Feature type
mRNA
Associated gene
Dmel\CG42238
Evidence Rank
Length (nt)
3408
Evidence Score
Genomic Location
Genomic Maps
cDNA Clones Consistent with the Transcript ( 40 )
cDNA Clones, Fully Sequenced
Exact Match
    Contained within the annotated transcript, internally consistent
      End(s) extend beyond the annotated transcript, internally consistent
        cDNA Clones, End Sequence Only (ESTs)
        Contained within the annotated transcript, internally consistent
        End(s) extend beyond the annotated transcript, internally consistent
          Sequence
          Sequence Downloader
          CGGCCAGTCGGCGAAAAATTTTCAAATCGCGGGGTCGTACAGCGGACGATTTTCAATCGGAACGGTTCAGCTTTGGAGCG
GAGCGCGGAGTTTCGCATTTTTTGTGTTTGTAGCGGAAAATCGGATGAAAAACTCCAAATGTTTACCAAATGAGCGGCGA
CAAATACGCGACCAATTGACGAGATCGTGTGTGTTTTTCTCAATTAAACGAAAAGAAAGCAGAAAAACTAAGGAAAGGAA
AACAGAAACTGAAATTGAATAAGAAAATTGTCCATTTTGGTTTTCCGTGGCAGAGAAAAGTGAAAAGTTTAATTTACTAA
ACAAAGCGGCTAAACTGTGTGCGTGTGTGTAGGCGGTTGAGTCTACATGTGTTTGTGTGTGTGTGGCTGTGTCTCTCTAG
TTTTTGCAATTCCCACTGCACACGCTGTTTCGTGTTGGATTATTGGATTATACCGCCAATAACGGCACACGCACAGCAAC
AAAAACAACAAAAAAGCGATAGGGGAGAGCAGACGACGCTGGGATTAATCATTAATGTCCTGAGATATAAAGAACAGGAC
TTCCGAAGAACAAGAACAAGGAGCAGTGTGGAAGAGGACGCAGCAGACTTAGAGACGAAAGCGAGAAAAGTTTTATATGC
GGAAGCCAATATCGCCATAGGACCGAAATTCTCAAGTACAAGTCCGTTTCACTTCTCCAGCTGGAAACGAAACCCTTCGT
CCTGTCATGCGTCCCTTTCTGCTAATTGCTTTGTGTGACGAGCTCCTGGCGCCTCCTTGCCTCCACTAAGCAGCCCAGAT
CCTTCCACACTCAAAGCTCAAGATACTTACCCGGCGACGAAGATACACACATACCTGAAGAACCGCAGCTGTGCAGCCTG
CATTATTTTCCTGGAGGAATGGAAGTTGGATTGGAAGGAGGAAAACCCAACGCCAACGCGTCTCGTCGACTGTCATGTGC
GAGTTTTGTGGCCCCTAACTAAGGCGCCTTGCATAAATTTACGCCAGAGGATAAGCCAAAAAACAAAAAAAAAAAGAAAG
CAGGAGAAGGGCGGTGGAGAGGATAAGAAGAATACTGGCAAGGCAAACATAAAGCAATTTTATGCGTTTTTAAAATGCGG
CAATTGACTGAAACAACAAAAGCGAACCGAGAGACGAGTGGAAAATTCAGGCAAGCCGCATAGCATCGTCCATAATTAGC
GCCATCGTAGCCAGGGAGCCAAGAAGCAACCAATGGAACATGTTGATGCCGGTGCGGGAGTACAACAAGCACATAGCCAA
AATACCAAATTGCAAGATGAGGCAGCGGCCAACGCTTAGAGCCACCTTCGCATCCCTGCTGCTGCTCCTTCTCATTGCCC
AGACGCTCGATCTGGCGGCTGCCAGTGGATCAGCCGGAAGTGGTGCCGCAGCGGCCGGAGCTGCAGGTCCTGCCGCGTCC
GGTGGCGCGGGTGGCGGGAGTCTGAGCAGTGGAGCCCCCACTCTCATTGCCAATCTCACGGAACAAGGCAGTCCCGGTGT
GTATAATTCGACAATGGGTTAATGCTAATTACTAGTATATATATACATGGCATTTACGTGGCAGTTTGCTGACCTTTTTA
CCTTTTGGCCCTCAACGTAAACGACGTCGTCATTTCGGTATTTGCTAAATGTTTATGCGGAATCGTTTCTATGAAAACCG
CCTACAATAACATTCATTCAAATCGAACAAACAAATTAAATTACATTGTTCGCGTCACTTAGAATATGATTTTAAATAAA
TATTATTCTTTTCTAAGACCATCGAGTTGTCGCTTTTCGCAAAGTGTAGAATTCATGATATTCTTAGCATAAACTTAGAA
TATACGTCCGTGCCGATTTTTGTGTGTATTTCCTTGTGCGCATTTCCGGTTTCTGCTTCCGGTTGCCACGCGGCGGGGGT
GGCAAAAACTATTAGCCACTTGGCGCTAAACAACGCCACCCACGCCCACTCTTCCCCGCTACTGAAGCAAAACACTAAGC
ATCAATTAACCCAATTTTCAGAATCCATTTTCACCTGCAGTTACGGTTTCAGCTCACAGCTCCGGACCTTTGGCCTTTTC
TAAGTATTTTCTAGCTGCGTGTTTCACAGCTCCATGCTTACATATACAAATATATGCATTGCTATGTTTTTTTTTTTTTT
TTTTTTTTTTTGGAAAAGAGTTGTTCCCTTGCGCTTTTTTCTTCTAGCAAATACCCAAGTGGCGGTGTTGAAACCAACGT
CCAACGTCCAGGTCCCAATTCCCCAGACCCACCTAATCCTATAGGTTTAATGCCGGGCACTGTTGTCCAGACTTTTTCGT
GTTCCCTGCCGTTTCTTCTTTCTTTCACAGGCGTTGGCGCTATTGTTGTAGTTTGGTTTGGATTGGTCACTGGATCGGGA
TATGGATTGGAAATGGAAATGGAGTGGAAGCTGAAATCATAATTAATCCATTGATTTCCAATTTTTTTTCAGCTTAAATA
ATTCACACAAATCATTTCAGCAATAAATATGAATTCTTTCGCAGCATTTAACAATGAATATTTCAGCAAACAAATGTTTT
TTTCAGCCAAGGTTACCTTATTTGTTTTAAATAACATGGGATCCAATTACAAATTGATGTGCAGGTAATGAACGTAGAAA
GAAAAAATTGAATCATTTTAATTTGGAAACGCCACTGTTGCAAACTTTGATTTGCATGTAAAGTCATAAATAATTCATTT
TAACACATCCAACATTTATGAATAATTTTTTCTGTGCTCTTTATATTCTAGCTGTCGCTATTAATCAAATTATACGTTTA
CTACATGCATTTTTAAATTGTTTATTTATGTCGCTACGTTTATGCAGCCGCCTGGAAATTTTGTGTGACAGAGTGTCATA
AACTGGAGAATGCGGGTGGCCATCTTACCTGGCGCTTGATTGATTCCACCAGCCAAAAAATAAACACCTGGAACGACGCC
AGATGTCGAGGATAATAAATTTGCCAGGATTCGACTACACTTGGGATACATTTTGAAATTCTGGAAGTCAGTAGCCCGAC
TCAAAGTATACGAAATGGAAATGTATATATTGTTTATAAAAACGTCAAATCGCCTATAGACTGTAGCACTATAGCTAAAA
GGTATATTTCTTAAAAGAAATTATGCTTAAAAGCTAGTAATGTAAATTAGGGCTGCCTTGTATTTCAAAAAGTTGTATAA
AAACTAAATTATGTGTGGAAACCGAAATGCTTGTGCTCAAGAAATTATGATTATAATCTGAACTGTAGAAATTAGGTGAT
CTTAATGCCTGCATAAAGTGTAAAACAAACTGCAAGAATGTACAAATTATTAACTGATTCCGTCCGCACCCTGACAACTG
TGTTAACTAACTTTAAGATCTAAAAATAAAAACTAATTTATATAAAAT
          Other Products of this Gene
          Other Transcripts
          Name
          FlyBase ID
          Length (nt)
          CG42238-RA
          FBtr0290305
          2437
          CG42238-RB
          FBtr0290306
          2408
          CG42238-RC
          FBtr0331199
          3589
          CG42238-RD
          FBtr0331200
          2234
          Polypeptides
          Derived from THIS transcript
          Name
          FlyBase ID
          Length (aa)
          CG42238-PE
          FBpp0312587
          100
          Derived from OTHER transcripts
          Name
          FlyBase ID
          Length (aa)
          CG42238-PA
          FBpp0288744
          148
          CG42238-PB
          FBpp0288745
          100
          CG42238-PC
          FBpp0303626
          100
          CG42238-PD
          FBpp0303627
          100
          Comments

          Unconventional splice site postulated (GA-AG).

          Transcript terminates at site supported by polyadenylated cDNA.

          transcript_exception: non_canonical_splice_site

          Transcriptional initiation is supported by RAMPAGE TSS data (FBrf0220331).

          External Crossreferences and Linkouts ( 1 )
          Crossreferences
          RefSeq - A comprehensive, integrated, non-redundant, well-annotated set of reference sequences including genomic, transcript, and protein.
          Synonyms and Secondary IDs (1)
          Reported As
          Symbol Synonym
          CG42238-RE
          Secondary FlyBase IDs
            References (0)