FB2026_01 , released March 12, 2026
FB2026_01 , released March 12, 2026
CV Term Report
Help Close All Open All
General Information
Term clip-seq ID (Ontology) MI:2192 (Molecular Interactions)
Definition This method combines UV cross-linking and immunoprecipitation with high-throughput sequencing to identify binding sites of RNA-binding proteins.\nhttps://en.wikipedia.org/wiki/HITS-CLIP[ PubMed:18978773 PubMed:21633356 ]
Also Known As "CLIP-Seq" ; "clip-seq" ; "HITS-CLIP" (for all, see Synonyms field below)
Comment
Links to External Ontologies
Annotations
Records annotated with this term OR any of its CHILD TERMS
    Results list data from multiple species. Click on a button above and use the 'Filter by species' options on the resulting HitList to retrieve species-specific data.
Records annotated with this exact term (annotations to child terms are NOT included)
No relevant records available
show Full annotation statements including this term (annotations to child terms are NOT included), and relevant FlyBase records
 Full annotation statements 
Relevant FlyBase reports
 Interaction Groups
 clip-seq (all annotations which use CV term, excluding "NOT" statements)      21
Spanning Tree (Parents/Children)
Only view relationship: 
  nucleic acid uv cross-linking assay
   |__clip
       |__clip-seq  21 rec.
Spanning Tree View Settings
Parents/Children
View Depth
Show hierarchy levels: for parents, for children
hide Relationships
Is a clip
Part of
hide Synonyms & Secondary IDs
Synonyms
  • "CLIP-Seq" EXACT PSI-MI-alternate
    "clip-seq" EXACT PSI-MOD-short
    "HITS-CLIP" EXACT PSI-MI-alternate
    "UV cross-linking immunoprecipitation combined with high-throughput sequencing" EXACT PSI-MI-alternate
Secondary IDs
hide External Crossreferences & Linkouts