FB2025_01 , released February 20, 2025
Transcript: Dmel\Pka-R1-RT
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General Information
Symbol
Dmel\Pka-R1-RT
Species
D. melanogaster
Annotation Symbol
CG42341-RT
FlyBase ID
FBtr0300534
Feature type
Associated gene
Evidence Rank
Length (nt)
3240
Evidence Score
Genomic Location
Genomic Maps
cDNA Clones Consistent with the Transcript ( 49 )
cDNA Clones, Fully Sequenced
Exact Match
    Contained within the annotated transcript, internally consistent
      End(s) extend beyond the annotated transcript, internally consistent
        cDNA Clones, End Sequence Only (ESTs)
        End(s) extend beyond the annotated transcript, internally consistent
          Sequence
          CCATATCAGACGCTCACCACTGCATGCAGCCCAAAAAAAACAACAACGTTTGACTGCGGCGCTTGAAAGCTGTTTCCCCA
          TCACCATATCATCACTGCCATTCATTGCAAACCCACTCTGGAATCCATCCCACCTCCACCGTACCACATGTCCTACATGA
          TGGCCAAAACGCTGGAGGAGCAGAGCCTGCGGGAGTGCGAACACTACATCCAGACGCATGGGATCCAGCGAGTCCTCAAG
          GACTGCATCGTCCAGCTGTGCGTCTGCAGACCCGAGAATCCCGTGCAGTTCCTGCGACAGTACTTTCAGAAACTCGAGAG
          GGAACAAGTCAAACTGGATGCCAGTAGACAGGTAATCAGCCCCGACGACTGCGAAGATCTCAGCCCGATGCCACAAACAG
          CTGCTCCACCGGTTCGCAGGCGAGGCGGAATCTCCGCCGAACCCGTAACCGAAGAGGATGCCACCAACTATGTTAAGAAG
          GTGGTGCCCAAGGACTACAAGACGATGAATGCCCTGTCCAAGGCGATTGCCAAGAACGTCCTGTTCGCTCACTTGGACGA
          GAGCGAGAGATCCGACATATTTGATGCCATGTTCCCTGTGAATCACATCGCCGGCGAGAATATCATCCAGCAGGGCGATG
          AAGGCGACAACTTCTACGTGATTGATGTGGGAGAGGTCGATGTTTTCGTCAACTCCGAACTAGTGACCACCATCAGCGAG
          GGCGGCAGCTTTGGTGAACTGGCCCTCATCTATGGCACTCCTCGCGCCGCCACCGTGCGCGCCAAAACCGATGTGAAGCT
          GTGGGGAATCGACCGCGACTCCTACCGCCGCATTCTGATGGGCTCGACCATCCGCAAGCGCAAGATGTACGAGGAGTTCT
          TATCGCGCGTGTCCATTCTGGAGAGCTTGGACAAATGGGAGCGCCTCACAGTGGCCGATTCCCTGGAGACGTGCTCCTTC
          GATGACGGTGAGACGATTGTCAAGCAGGGAGCAGCTGGCGATGACTTCTACATCATCCTCGAGGGCTGTGCGGTGGTGCT
          GCAGCAGCGTTCTGAGGGCGAGGATCCCGCCGAGGTGGGCCGTCTGGGTAGCAGCGATTACTTTGGCGAGATTGCTCTGC
          TTTTGGACCGACCACGTGCAGCGACTGTTGTAGCTCGTGGGCCGCTCAAATGCGTCAAACTGGACCGGGCGAGATTTGAA
          CGCGTGTTGGGACCCTGCGCCGACATACTCAAACGCAACATCACGCAATACAACAGTTTCGTATCGTTGTCCGTTTAAGA
          CCGCAACAACGACAACAACCACTACAGCAGATAAACAACAAAGAGCAGCAGCAGCAAAGAAAGCAACTACAACCGACAAA
          ACAAACAGAAACAACAACGCAGCGAACGTGAGAAACCAACAGGAAGACGATGGGAACTAGTTGGATAGATATATAGATAA
          GAAAAACAAACGCTCAGCAGCATAAACATGAAGTCGTAACTTATATAAGTGTGTAAAATTAATTGTCACAGCCATTTGAT
          TCTCGATTCTGTCGGAGATTCAGATTCAGATTCAGAGAGCACGCGGGCTGAGGGCTAAACAAATATTAATTATCCGATTC
          TGTATGTTGTGCTGAAGTTATATAATTGTGTATGTGTGTGTCTCTGTGCAAAGGTTGCGTCGGCATGTTCCACACCCCGC
          GACCCCCGATATCGGAGATAGCTTTCCCCGGATACATCTATATACTTCTCTCAACTTCTTTTAAATTCTCCGGGTCTTTC
          GAAAAAGAGAGCCCATTTGTATAATCTATGGGACATGCTGCCTCCTCAAAAACGTTTCATTAAATATCCAACAGACATCT
          GAATGTTTTTAAAAAAAGAAATAAACAAGATGAATATATGTGTAATAACTTAAATCATAAAAGGCTACACACACAGGCAC
          AAAACACAGACACACCAACTCACACACTCTCATACGAGGCATGAAGTCATGGAAATGATAGGACTTGAATGAAACAATGG
          TATTTTGCTTGTATGATTCGTTGTTTTTTGTCTAGAACAAAAGCACAACGGCAGCAATTAATTAACCATTTTAATTTTAA
          TTTTAGTAAATTATTCTTACAAGTAAACGCGTACCACGTGAAGTCAGCGAGCGTAAACTTTTCAATTAAACATTAAAATC
          AGTGAAAACTTCATGATTTTTTAACATGTTTCTTGTTTCTTCATCGAAAGGTGTTTTGTAATCTTAACATAGTTTTATGA
          TTTTTTATTAACTAATTTAAGCTTGAGCACAGCGAATGCCTAGTTTAACTGTTATCAAAGAGGTATTTCCGTTCTTCAAA
          AATGTACATATGTCAAGTTTAGAAAGTTGTTTTATTTTCTTATATTGTAAGACTGTAATTTTGGAGTTTTGGGCTTTAAA
          AAAAAGCCATACAATACTTTTTAATCACGTTATGATAGTTGAAAATTTAAAATTAAAATTGATTGATTATACACATTTCT
          TGGAATACCTCTAAAGTTTCAAAACTAATGTACTAGGCATTTCCCAAAACTGCCAGCTAACGAGAAGATAACTGCAACAA
          TTTATATCGGATAGCATGGGTTTGCCTGTGTGTTGGGTGAGTGTGCGTGTGTATCTGTGTGAACTAATGAATATTGCCCA
          AACGAGAAGTTGCATTTACAACACTCAGAAAAAAACGCAGCCAACAAGAACATTTGTGTGTATATATTTATAAAGCTTAT
          ATCTGCTCGATAGATCATGAAACATTATCTACAGCTGTTGCTACATCACACGCGCACACACTCATCCACCTCCTCTCAAA
          CATGAAGTCATAACTGGAAAATGCGATTTTGAAATGCACACATACTGAGATAAAGCTAAAATTTTGACATTTTTACAGAC
          CAGAAGCTTAAATCGAAAATATCTGTGCTAATATTTCAGCTATGAGACACTGTTAGAAAATGAGCAAAATGCAAAATGCT
          AAAGGTTGAGCCTATGTAGAACATTTGTAAGGGGTCTGCGCCGTGTGCAGGCCACGCCCATTTGGGCGTAGATGGAACCC
          GCCGGCGGGTCAGAAACGAAAATAAAAGGCAAAATCGTTTTGAGGTCACGGAAAAATCAACTTTAAGCCGACGTGCAGGC
          AGTGGAGGCAAGGAGATCGAGTGGAATACAATTAAATTACAAGCATAATATTATCAATGTAAAATCGTATGTAAAAAACA
          AGGCAGAAATCCATAAAAAAATTGACAACAAACAAACAAC
          
          Other Products of this Gene
          Other Transcripts
          Name
          FlyBase ID
          Length (nt)
          FBtr0302641
          3638
          FBtr0302642
          3580
          FBtr0302643
          3243
          FBtr0299891
          2245
          FBtr0299892
          2867
          FBtr0300528
          3635
          FBtr0300529
          3242
          FBtr0299893
          3424
          FBtr0300530
          3577
          FBtr0300531
          2423
          FBtr0300532
          3315
          FBtr0300533
          3068
          FBtr0300535
          3570
          FBtr0302637
          1648
          FBtr0302638
          2426
          FBtr0302639
          3245
          FBtr0302640
          3318
          Polypeptides
          Derived from THIS transcript
          Name
          FlyBase ID
          Length (aa)
          FBpp0289761
          376
          Derived from OTHER transcripts
          Name
          FlyBase ID
          Length (aa)
          FBpp0291781
          377
          FBpp0291782
          377
          FBpp0291783
          377
          FBpp0289169
          376
          FBpp0289170
          376
          FBpp0289755
          376
          FBpp0289756
          296
          FBpp0289171
          463
          FBpp0289757
          376
          FBpp0289758
          321
          FBpp0289759
          319
          FBpp0289760
          296
          FBpp0289762
          376
          FBpp0291777
          464
          FBpp0291778
          322
          FBpp0291779
          297
          FBpp0291780
          320
          Comments

          Transcript terminates at site supported by polyadenylated cDNA.

          Due to an oversight in the implementation of gene annotation merges, the symbols for this transcript and its associated polypeptide were changed to non-unique designations in r5.9. Although there were no conflicts within a given release, the same symbols were used for different isoforms in different releases. Prior to r5.9 the transcript symbol was Pka-R1-RG; from r5.9 to r5.12, it was Pka-R1-RI; in r5.13 it was changed to Pka-R1-RT, a symbol that has not been used previously in the database.

          Transcript structure supported by FBrf0048100.

          External Crossreferences and Linkouts ( 1 )
          Crossreferences
          RefSeq - A comprehensive, integrated, non-redundant, well-annotated set of reference sequences including genomic, transcript, and protein.
          Synonyms and Secondary IDs (1)
          Reported As
          Symbol Synonym
          Pka-R1-RT
          Secondary FlyBase IDs
            References (0)