BLAST Database information

Database availability

Species	Genome assembly	Annotated genes	Annotated proteins	Intergenic sequences	Syntenic blocks
Drosophila ananassae	X
Drosophila biarmipes	X
Drosophila bipectinata	X
Drosophila elegans	X
Drosophila erecta	X
Drosophila eugracilis	X
Drosophila ficusphila	X
Drosophila grimshawi	X
Drosophila kikkawai	X
Drosophila melanogaster	X	X	X	X
Drosophila miranda	X
Drosophila mojavensis	X
Drosophila persimilis	X
Drosophila pseudoobscura pseudoobscura	X				X
Drosophila rhopaloa	X
Drosophila sechellia	X
Drosophila simulans	X
Drosophila takahasii	X
Drosophila virilis	X
Drosophila willistoni	X
Drosophila yakuba	X
Acromyrmex echinatior	X
Acyrthosiphon pisum	X
Aedes aegypti	X
Anopheles darlingi	X
Anopheles gambiae	X
Apis florea	X
Apis mellifera	X
Atta cephalotes	X
Bombus impatiens	X
Bombus terrestris	X
Bombyx mori	X
Camponotus floridanus	X
Culex quinquefasciatus	X
Danaus plexippus	X
Harpegnathos saltator	X
Ixodes scapularis	X
Linepithema humile	X
Mayetiola destructor	X
Megachile rotundata	X
Nasonia giraulti	X
Nasonia longicornis	X
Nasonia vitripennis	X
Pediculus humanus corporis	X
Pogonomyrmex barbatus	X
Rhipicephalus microplus	X
Rhodnius prolixus	X
Solenopsis invicta	X
Tribolium castaneum	X

Species	Transposons - all annotated elements	Transposons - canonical set	GenBank sequences	GenBank EST sequences	GenBank GSS sequences	GenBank protein sequences
Drosophila ananassae		X	X	X	X	X
Drosophila biarmipes			X			X
Drosophila bipectinata			X			X
Drosophila elegans			X			X
Drosophila erecta			X	X	X	X
Drosophila eugracilis			X			X
Drosophila ficusphila			X			X
Drosophila grimshawi			X	X	X	X
Drosophila kikkawai			X			X
Drosophila melanogaster	X	X	X	X	X	X
Drosophila miranda			X		X	X
Drosophila mojavensis			X	X	X	X
Drosophila persimilis			X		X	X
Drosophila pseudoobscura pseudoobscura		X	X	X	X	X
Drosophila rhopaloa
Drosophila sechellia			X	X	X	X
Drosophila simulans		X	X	X	X	X
Drosophila takahashii
Drosophila virilis		X	X	X	X	X
Drosophila willistoni		X	X	X	X	X
Drosophila yakuba		X	X	X	X	X
Acromyrmex echinator			X			X
Acyrthosiphon pisum			X	X		X
Aedes aegypti			X	X	X	X
Anopheles darlingi			X	X		X
Anopheles gambiae			X	X	X	X
Apis florea			X			X
Apis mellifera			X	X	X	X
Atta cephalotes			X			X
Bombus impatiens			X			X
Bombus terrestris			X			X
Bombyx mori			X	X	X	X
Camponotus floridanus			X	X		X
Culex quinquefasciatus			X	X		X
Danaus plexippus			X	X		X
Harpegnathos saltator						X
Ixodes scapularis			X	X	X	X
Linepithema humile			X			X
Mayetiola destructor			X			X
Nasonia giraulti			X	X		X
Nasonia longicornis			X			X
Nasonia vitripennis			X	X		X
Pediculus humanus corporis			X	X		X
Pogonomyrmex barbatus			X			X
Rhipicephalus microplus			X	X	X	X
Rhodnius prolixus			X	X		X
Solenopsis invicta			X	X
Tribolium castaneum			X	X	X	X

Database descriptions

Database	Type	Description
Genome assembly	nucleotide	Largest assembled unit. All non Drosophila assemblies are pulled from GenBank.
Annotated genes	nucleotide	FlyBase annotated genes
Annotated proteins	protein	FlyBase annotated proteins
GLEANR CDS predictions	nucleotide	GLEANR CDS predictions from the AAA group. This database will be folded into "Annotated genes" for each Drosophila species once FlyBase has integrated all the annotations. Check the availability table above for the current status or Contact FlyBase if you have further questions.
GLEANR protein predictions	protein	GLEANR protein predictions from the AAA group. This database will be folded into "Annotated proteins" for each Drosophila species once FlyBase has integrated all the annotations. Check the availability table above for the current status or Contact FlyBase if you have further questions.
Intergenic sequences	nucleotide	Intergenic sequences derived from the coordinates of FlyBase gene models.
Syntenic blocks	nucleotide	Regions/blocks of synteny between the species the database is listed under and another species, usually Dmel.
Transposons - all annotated elements	nucleotide	Any transposons annoated by FlyBase.
Transposons - canonical set	nucleotide	A consensus set of transposons derived from transposon_sequence_set.embl.txt.gz
Degenerate scaffolds	nucleotide	No longer available
GenBank	nucleotide	All GenBank sequences from the Core Nucleotide database for the species.
GenBank EST	nucleotide	All GenBank sequences from the EST division for the species.
GenBank GSS	nucleotide	All GenBank sequences from the GSS division for the species.
GenBank protein	protein	All GenBank protein sequences for the species.
UniProt	protein	No longer available.