FlyBase Aberration Report: Dmel\Df(1)BSC622

General Information

Symbol

Df(1)BSC622

Species

D. melanogaster

Name

FlyBase ID

FBab0045563

Feature type

chromosomal_deletion

Computed Breakpoints include

[7C2-7C2];[7D1-7D1];

Features within 7C2--7D1

Genomic Maps

JBrowse

Sequence coordinates

X:7,908,547..7,908,547 (Df(1)BSC622:bk1)

(Bloomington Drosophila Stock Center, 2008.8.7)

X:7,955,978..7,955,978 (Df(1)BSC622:bk2)

(Bloomington Drosophila Stock Center, 2008.8.7)

Member of large scale dataset(s)

Dfs_BSC_set2

A set of ~800 largely isogenic deficiency stocks created by FLP-induced recombination between FRT-carrying transgenic insertions; molecularly defined deletion endpoints correspond to initial location of the progenitor insertions. Designed to fill gaps in deletion coverage and breakpoint placement; also used to replace older available deficiencies that have not been molecularly mapped.

(Cook et al., 2012)

Nature of Aberration

Cytological Order

Progenitor

PBac{WH}CG15332^f05798

(Christensen et al., 2008.9.29)

P{XP}d08569

(Christensen et al., 2008.9.29)

Mutagen

FLPase

(Christensen et al., 2008.9.29)

Class of aberration (relative to wild type)

chromosomal_deletion

(Christensen et al., 2008.9.29)

Class of aberration (relative to progenitor)

chromosomal_deletion

(Christensen et al., 2008.9.29)

Breakpoints

7C2;7D1

(FlyBase Curators, 2008)

Causes alleles

Carries alleles

Transposon Insertions

P+PBac{XP5.WH5}BSC622

(Christensen et al., 2008.9.29)

Formalized genetic data

Genetic mapping information

Comments

Breakpoint from FlyBase's release 5 sequence location of progenitor insertion.

(Bloomington Drosophila Stock Center, 2008.8.7)

Comments on Cytology

The cytological breakpoints of Df(1)BSC622 predicted from the Release 5 genomic coordinates of the insertion sites of the progenitors P{XP}d08569 and PBac{WH}CG15332^f05798 are 7C2;7D1.

(Christensen et al., 2008.9.29)

Sequence Crossreferences

DDBJ / EMBL / GenBank

DNA sequence

Protein sequence

Gene Deletion and Duplication Data

Genes Deleted / Disrupted

Complementation Data

Completely deleted / disrupted

orion

(Boulanger et al., 2021)

Ubr3

(Li et al., 2016)

Partially deleted / disrupted

Molecular Data

Completely deleted

Partially deleted

Genes NOT Deleted / Disrupted

Complementation Data

Molecular Data

Genes Duplicated

Complementation Data

Completely duplicated

Partially duplicated

Molecular Data

Completely duplicated

Partially duplicated

Genes NOT Duplicated

Complementation Data

Molecular Data

Affected Genes Inferred by Location (11)

Related Comments

Phenotypic Data

In combination with other aberrations

1: P{XP}d08569

(Christensen et al., 2008.9.29)

2: PBac{WH}CG15332^f05798

(Christensen et al., 2008.9.29)

NOT in combination with other aberrations

Stocks (5)

Bloomington

32129

Dp(1;Y)BSC173, y⁺ P{3'.RS5+3.3'}BSC9, Bar^S/Df(1)BSC622, w¹¹¹⁸/C(1)RA, In(1)sc^J1, In(1)sc⁸, l(1)1Ac¹, sc^J1 sc⁸

32130

Dp(1;Y)BSC174, y⁺ P{3'.RS5+3.3'}BSC9, Bar^S/Df(1)BSC622, w¹¹¹⁸/C(1)RA, In(1)sc^J1, In(1)sc⁸, l(1)1Ac¹, sc^J1 sc⁸

32131

Dp(1;Y)BSC175, y⁺ P{3'.RS5+3.3'}BSC9, Bar^S/Df(1)BSC622, w¹¹¹⁸/C(1)RA, In(1)sc^J1, In(1)sc⁸, l(1)1Ac¹, sc^J1 sc⁸

32132

Dp(1;Y)BSC176, y⁺ P{3'.RS5+3.3'}BSC9, Bar^S/Df(1)BSC622, w¹¹¹⁸/C(1)RA, In(1)sc^J1, In(1)sc⁸, l(1)1Ac¹, sc^J1 sc⁸

32134

Dp(1;Y)BSC178, y⁺ P{3'.RS5+3.3'}BSC9, Bar⁺/Df(1)BSC622, w¹¹¹⁸/C(1)RA, In(1)sc^J1, In(1)sc⁸, l(1)1Ac¹, sc^J1 sc⁸

Notes on Origin

Discoverer

Balancer / Genotype Variants of the Aberration

Separable Components

Other Comments

The presence of P+PBac{XP5.WH5}BSC622 was verified using the PCR methods and primers described in FBrf0175003.

(Christensen et al., 2008.9.29)

Synonyms and Secondary IDs (2)

Reported As

Symbol Synonym

Def(1)BSC622

(Boulanger et al., 2021)

Df(1)BSC622

(Ribot et al., 2022, Li et al., 2020, Sawyer et al., 2020, Johns et al., 2018, Li et al., 2016, Cook et al., 2012, Christensen et al., 2008.9.29, FlyBase Curators, 2008)

Name Synonyms

Secondary FlyBase IDs

References (11)

Report Sections

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