One copy of Su(var)2041 strongly suppresses position effect variegation (PEV) at the w locus caused by In(1)wm4.
One copy of Su(var)2041 is unable to suppress the telomeric position effect (TPE) in stocks carrying a variegating P{hsp26-pt-T}39C-5 insertion at the telomere of the left arm of chromosome two.
Mutant suppresses the In(1)wm4 and T(2;3)SbV phenotype but only marginally suppresses the In(2R)bwVDe2 phenotype. Moderate to strong maternal effects as seen by elevated w+ eye pigment levels in non-suppressor bearing offspring of Su(var) females. Removal of segments of heterochromatin from the genome by loss of the Y chromosome abolishes the suppression of the position effect variegation phenotype. The effect of the Su(var)204 allele is reduced in heterozygotes with Df(2R)M41A10 (which lacks 2R heterochromatin). Viability of the Su(var)204 heterozygotes is butyrate-sensitive. Su(var)204 and Su(var)209 complemented all other mutants with respect to female fecundity.
Phenotypic interactions exist between E(var) and Su(var) mutations. Su(var)2041; Dp(2;2)Mdh3 double mutants display reductions in eye pigmentation.