FB2026_03 , released September 17, 2026
Human Disease Model Report: pontocerebellar hypoplasia, TSEN54-related
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General Information
Name
pontocerebellar hypoplasia, TSEN54-related
FlyBase ID
FBhh0001450
OMIM
Overview

This report describes pontocerebellar hypoplasia, TSEN54-related (TSEN54-PCH). The TSEN54 gene is implicated in multiple forms of this disease, including pontocerebellar hypoplasia, type 4 (MIM:225753, FBhh0001451), pontocerebellar hypoplasia, type 2A (MIM:277470, FBhh0001452) and pontocerebellar hypoplasia, type 5 (MIM:610204, FBhh0001453); all exhibit autosomal recessive inheritance. TSEN54 encodes a subunit of the tRNA-splicing endonuclease complex, a complex responsible for identification and cleavage of the splice sites in pre-tRNAs that contain introns. There is a single orthologous gene in Drosophila, Dmel\Tsen54, for which a number genetic reagents have been generated including RNAi targeting constructs and alleles caused by insertional mutagenesis.

The human TSEN54 gene has not been introduced into flies.

Animals homozygous for loss-of-function Tsen54 alleles typically die during the larval or pupal stage. An overall reduction in brain lobe size is observed in mutant larval brains; larval locomotion is reduced.

[updated April 2022 by FlyBase; FBrf0222196]

Disease Summary Information
Parent Disease Summary: pontocerebellar hypoplasia
Symptoms and phenotype

Multiple subtypes of pontocerebellar hypoplasia have been described. All forms of this condition are characterized by impaired brain development, delayed development overall, problems with movement, and intellectual disability. The brain abnormalities are usually present at birth, and in some cases they can be detected before birth. Many children with pontocerebellar hypoplasia live only into infancy or childhood, although some affected individuals have lived into adulthood. [MedlinePlus, Pontocerebellar hypoplasia; 2022.04.16]

Pontocerebellar hypoplasia (PCH) refers to a group of severe neurodegenerative disorders affecting growth and function of the brainstem and cerebellum, resulting in abnormally small cerebellum and brainstem. [from MIM:607596; 2022.04.16]

Specific Disease Summary: pontocerebellar hypoplasia, TSEN54-related
OMIM report
Human gene(s) implicated
Symptoms and phenotype

TSEN54 pontocerebellar hypoplasia (TSEN54-PCH) comprises three PCH phenotypes (PCH2, 4, and 5) that share characteristic neuroradiologic and neurologic findings. The three PCH phenotypes (which differ mainly in life expectancy) were considered to be distinct entities before their molecular basis was known. [Gene Reviews, TSEN54 Pontocerebellar Hypoplasia; 2022.04.16]

Genetics
Cellular phenotype and pathology
Molecular information

TSEN54 encodes a non-catalytic subunit of the tRNA-splicing endonuclease complex, a complex responsible for identification and cleavage of the splice sites in pre-tRNA. [Gene Cards, TSEN54; 2022.04.16]

In metazoans, although most tRNA genes are intronless, a subset contains introns (FBrf0253008 and references cited therein).

External links
Disease synonyms
TSEN54-PCH
Ortholog Information
Human gene(s) in FlyBase
    Human gene (HGNC)
    D. melanogaster ortholog (based on DIOPT)
    Comments on ortholog(s)

    One to one: 1 human gene to 1 Drosophila gene.

    Other mammalian ortholog(s) used
      D. melanogaster Gene Information (1)
      Molecular function (GO)
        Cellular component (GO)
        Gene Groups / Pathways
          Comments on ortholog(s)

          Moderate-scoring ortholog of human TSEN54 (1 Drosophila to 1 human).

          Orthologs and Alignments from DRSC
          DIOPT - DRSC Integrative Ortholog Prediction Tool - Click the link below to search for orthologs in Humans
          Other Genes Used: Viral, Bacterial, Synthetic (0)
            Summary of Physical Interactions (1 groups)
            protein-protein
            Interacting group
            Assay
            References
            two hybrid, anti tag coimmunoprecipitation, anti tag western blot, Identification by mass spectrometry
            Alleles Reported to Model Human Disease (Disease Ontology) (2 alleles)
            Models Based on Experimental Evidence ( 2 )
            Modifiers Based on Experimental Evidence ( 0 )
            Allele
            Disease
            Interaction
            References
            Alleles Representing Disease-Implicated Variants
            Genetic Tools, Stocks and Reagents
            Sources of Stocks
            Contact lab of origin for a reagent not available from a public stock center.
            Bloomington Stock Center Disease Page
            Related mammalian, viral, bacterial, or synthetic transgenes
            Allele
            Transgene
            Publicly Available Stocks
            Selected Drosophila transgenes
            Allele
            Transgene
            Publicly Available Stocks
            RNAi constructs available
            Allele
            Transgene
            Publicly Available Stocks
            Selected Drosophila classical alleles
            Allele
            Allele class
            Mutagen
            Publicly Available Stocks
            References (3)