FB2026_03 , released September 17, 2026
Human Disease Model Report: spastic paraplegia 90A, autosomal dominant
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General Information
Name
spastic paraplegia 90A, autosomal dominant
FlyBase ID
FBhh0001517
Disease Ontology Term
Parent Disease
Overview

This report describes spastic paraplegia, SPTSSA-related, a complex type of hereditary spastic paraplegia. The human gene implicated is SPTSSA, which encodes serine palmitoyltransferase small subunit A, a component of serine palmitoyltransferase (SPT) which catalyzes the first committed and rate-limiting step in sphingolipid biosynthesis. There are two moderate-scoring fly orthologs, Dmel\CG34293 and Dmel\CG34194; neither gene has been analyzed in the context of this disease model.

A wild-type construct of the human Hsap\SPTSSA gene has been introduced into flies. Additionally, a single-chain construct of serine palmitoyltransferase including all SPT subunits ('scSPT'), both wild-type and with SPTSSA variants implicated in disease (T51I and H59L) have been introduced into flies. See the 'Disease-Implicated Variants' table below. Ubiquitous overexpression of wild-type or variant scSPT causes excessive biosynthesis of sphingolipids, resulting in severe neurological defects and shortened lifespan.

[updated Apr. 2024 by FlyBase; FBrf0222196]

Disease Summary Information
Disease Summary: spastic paraplegia 90A, autosomal dominant
OMIM report

[SPASTIC PARAPLEGIA 90A, AUTOSOMAL DOMINANT; SPG90A](https://omim.org/entry/620416)

Human gene(s) implicated

[SERINE PALMITOYLTRANSFERASE, SMALL SUBUNIT, A; SPTSSA](https://omim.org/entry/613540)

Symptoms and phenotype

Autosomal dominant spastic paraplegia-90A (SPG90A) is characterized by motor impairment and progressive lower extremity spasticity as well as neurologic findings, cognitive impairment, and hearing loss (Srivastava, et al., 2023, pubmed:36718090; FBrf0256324). [from MIM:620416; 2023.07.11]

Genetics

Autosomal dominant spastic paraplegia-90A (SPG90A) is caused by heterozygous mutation in the SPTSSA gene on chromosome 14q13. Biallelic mutation in the SPTSSA gene causes autosomal recessive SPG90B (MIM:620417). [from MIM:620416; 2023.07.11]

Cellular phenotype and pathology
Molecular information

SPTSSA variants impaired ORMDL regulation and caused excessive sphingolipid synthesis (Srivastava, et al., 2023, pubmed:36718090; FBrf0256324).

Serine palmitoyltransferase catalyzes the first committed and rate-limiting step in sphingolipid biosynthesis. SSSPTA is a small SPT subunit that stimulates SPT activity and confers acyl-CoA preference to the SPT catalytic heterodimer of SPTLC1 and either SPTLC2 or SPTLC3 (Han et al., 2009, pubmed:19416851). [from MIM:613540; 2023.07.11]

External links
Disease synonyms
spastic paraplegia, SPTSSA-related
SPG90A
Ortholog Information
Human gene(s) in FlyBase
Human gene (HGNC)
D. melanogaster ortholog (based on DIOPT)
Comments on ortholog(s)

Two to two (2 human to 2 Drosophila); SPTSSA has two moderate-scoring Drosophila orthologs, CG34293 and CG34194.

Other mammalian ortholog(s) used
    D. melanogaster Gene Information (2)
    Molecular function (GO)
      Gene Groups / Pathways
      Comments on ortholog(s)

      Moderate-scoring ortholog of human SPTSSA and SPTSSB (2 Drosophila to 2 human).

      Orthologs and Alignments from DRSC
      DIOPT - DRSC Integrative Ortholog Prediction Tool - Click the link below to search for orthologs in Humans
      Molecular function (GO)
        Gene Groups / Pathways
        Comments on ortholog(s)

        Moderate-scoring ortholog of human SPTSSA and SPTSSB (2 Drosophila to 2 human).

        Orthologs and Alignments from DRSC
        DIOPT - DRSC Integrative Ortholog Prediction Tool - Click the link below to search for orthologs in Humans
        Other Genes Used: Viral, Bacterial, Synthetic (0)
          Summary of Physical Interactions (0 groups)
          Alleles Reported to Model Human Disease (Disease Ontology) (3 alleles)
          Alleles Representing Disease-Implicated Variants
          Genetic Tools, Stocks and Reagents
          Sources of Stocks
          Contact lab of origin for a reagent not available from a public stock center.
          Bloomington Stock Center Disease Page
          Related mammalian, viral, bacterial, or synthetic transgenes
          Allele
          Transgene
          Publicly Available Stocks
          Selected Drosophila transgenes
          Allele
          Transgene
          Publicly Available Stocks
          RNAi constructs available
          Allele
          Transgene
          Publicly Available Stocks
          Selected Drosophila classical alleles
          Allele
          Allele class
          Mutagen
          Publicly Available Stocks
          References (6)