FB2026_01 , released March 12, 2026
FB2026_01 , released March 12, 2026
Physical Interaction report
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General Information
Interaction Type
Interacting Genes
FlyBase ID
FBig0000095596
Interaction Network
Interactions Browser links
snf network
snRNA:U2:14B network
Reported Interactions
FBrf0138511-8.coIP.NB
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
snf 

snf

bait

U1

prey
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Bait protein endogenous to extract.

Prey RNA endogenous to extract.

FBrf0210901-11.F
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
snf 

SNF

bait

dU2

prey

fluorescein label

Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
SLIV
sufficient binding region
GGCCGGUAUUGCAGUACCGCCGGGUCC
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Interaction in vitro; bait produced as a recombinant protein in bacterial system; prey produced and labeled by in vitro transcription.

FBrf0210901-5.FB.A
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
snf 

SNF

bait

dU2

prey

[32]P label

Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
SLIV
sufficient binding region
GGCCGGUAUUGCAGUACCGCCGGGUCC
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Interaction in vitro; bait produced as a recombinant protein in bacterial system; prey produced and labeled by in vitro transcription.

FBrf0225214-2.F
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
snf 

snf

bait

GST tag

snRNA:U2:14B

prey

fluorescein label

Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
stemloop IV
sufficient binding region
GGGCCCGGUAUUGCAGUACCGCCGGGUCC

synthetic nucleotide sequence not completely identical to Dmel sequence.

Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Interaction in vitro; bait produced as a recombinant fusion protein in bacterial system; prey RNA chemically synthesized and labeled in vitro.

One of several identical U2 snRNA genes chosen by curator to represent interaction. Addition of U2A greatly increases affinity of snf to U2 snRNA stemloop IV.

FBrf0239188-11.NMR
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
snf 

dSNF

neutral component
snf 

dSNF

neutral component
snf 
snf 

dSNF

neutral component
snf 

dU2

neutral component

dU2

neutral component

dU2

neutral component
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
snf 
RRM domain
sufficient binding region
aa 1-101
SLIV domain
sufficient binding region
GCGGCCGUAUUGCAGUACCGCGGCC
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Interaction in vitro; protein produced as a recombinant fusion protein in bacterial system; RNA chemically synthesized.

The snf-U2 snRNA interaction was curated to the products of all 6 identical or nearly identical U2 snRNA genes.

FBrf0239188-25.ITC
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note

dU2

bait
snf 

dSNF

prey
snf 
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
snf 
RRM domain
sufficient binding region
aa 1-96
SLIV domain
sufficient binding region
GCGGCCGUAUUGCAGUACCGCGGCC
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Interaction in vitro; proteins produced as a recombinant fusion protein in bacterial system.

Kd = 782nM. The snf-U2 snRNA interaction is stronger when snf is prebound to U2A, lowering the Kd to 117nM. The snf-U2 snRNA interaction was curated to the products of all 6 identical or nearly identical U2 snRNA genes.

External Crossreferences and Linkouts ( 1 )
Linkouts
MIST - An integrated Molecular Interaction Database
References (4)