FB2026_03 , released September 17, 2026
Physical Interaction report
Open Close
General Information
Interaction Type
Interacting Genes
FlyBase ID
FBig0000097012
Interaction Network
Interactions Browser links
grk network
sqd network
Reported Interactions
FBrf0108251-3.coIP.A
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
sqd 

Squid

bait
grk 

grk

prey

[32]P label

grk 
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
grk 
3-prime UTR
sufficient binding region
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Interaction in vitro; bait derived from wild-type ovary extract; prey produced and labeled by in vitro transcription.

FBrf0191561-2.XL.IP.A
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
sqd 

sqd synonym

bait
grk 

grk synonym

prey

[32]P label

grk 
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
grk 
3-prime UTR
sufficient binding region
unspecified
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

positive control

Interaction in vitro; bait produced and labeled by in vitro transcription; prey derived from wild-type adult female ovary extract.

FBrf0201934-2.PD
Reference
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
grk 

grk

bait

[32]P label

grk 
sqd 

SQD

prey
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
grk 
3-prime UTR
sufficient binding region

full length 3-prime UTR consisting of 500nt

Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Source was adult female ovaries; bait produced and labeled by in vitro transcription; prey produced as transgenic fusion protein in bacteriophage (prey from adult ovary cDNA expression library).

FBrf0201934-4.XL.A
Reference
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
grk 

grk synonym

bait

[32]P label

grk 
sqd 

SQD synonym

prey

GST tag

Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
grk 
3-prime UTR
sufficient binding region

full length 3-prime UTR consisting of 500nt

Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Interaction in vitro; bait produced and labeled by in vitro transcription; prey produced as a recombinant fusion protein in bacterial system.

FBrf0218722-21.coIP.PCR
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
sqd 

Sqd

bait

GFP tag

grk 

grk

prey
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Source was adult ovary of transgenic fly line; bait produced from tagged transgenic construct; prey produced from endogenous gene.

FBrf0218722-3.PD.MS
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
grk 

GLS

bait

λ phage BoxB tag linked to GST

grk 
sqd 

Sqd

prey
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
grk 
gurken localization signal
necessary binding region
nt 406-470
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Interaction in vitro; bait produced by in vitro transcription; prey derived from wild-type ovary extract.

GRNA chromatography: grk RNA containing a BoxB sequence of the λ phage was bound to a fusion of GST with the 21 residue N antiterminator peptide.

The grk-GST particles were pre-bound to resin and incubated with ovary extract.

FBrf0222280-5.coIP.PCR
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
sqd 

Sqd

bait

GFP tag

grk 

gurken

prey
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

sqd interacts with grk, osk and bcd RNA, but not nos or hb RNA.

Source was adult female ovary of transgenic fly line; bait produced from tagged transgenic construct; prey produced from endogenous gene.

Positive control.

FBrf0226455-1.coIP.PCR
Reference
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
sqd 

sqd

bait
grk 

grk

prey
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Source was adult ovaries; bait produced from endogenous gene; prey produced from endogenous gene.

Interaction increased in spn-B mutant.

External Crossreferences and Linkouts ( 1 )
Linkouts
MIST - An integrated Molecular Interaction Database
References (6)