FB2026_03 , released September 17, 2026
Physical Interaction report
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General Information
Interaction Type
Interacting Genes
FlyBase ID
FBig0000097019
Interaction Network
Interactions Browser links
Su(z)12 network
Caf1-55 network
Reported Interactions
FBrf0151814-6.CH.WB
Description
physical association
Collection
Cell line used
Participants
Corresponds to
Reported as
Role
Note

Su(z)12

neutral component

Su(z)12

neutral component

Su(z)12

neutral component

p55

neutral component

p55

neutral component

p55

neutral component
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

A histone methyltransferase activity was purified from embryonic nuclear extracts.

Source was embryonic nuclear extract wild-type fly line; proteins produced from endogenous genes.

The complex of Su(z)12, E(z), Rpd3, esc and Caf1 has an apparent size of 600-650 kDa (gel filtration).

FBrf0187520-5.coIP.MW
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note

Su(z)12

bait

FLAG tag

Nurf55

prey
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Purified proteins visualized by Coomassie staining.

The E(z), Caf1, Su(z)12 and esc proteins interact as part of the tetrameric Polycomb repressive complex 2 (PRC2) complex.

Analysis of direct interactions suggests that E(z), Caf1, Su(z)12 proteins form a core trimeric complex (all paiwise interactions detected) to which esc protein binds via direct interaction with E(z).

Source was extract of Sf9 cell line; bait produced from transfected construct; prey produced from transfected construct.

FBrf0188105-5.PD.MW
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note

Su(z)12

bait

FLAG tag

NURF55

prey
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Interaction in vitro; bait and prey produced recombinant fusion proteins in baculovirus and insect cell system.

Affinity purification of the esc-E(z) complex was carried out from a mixture of esc, E(z), Su(z)12, and Caf1-55 recombinant proteins. E(z) II domain C363Y results in loss of esc and reduction of E(z) from the complex.

FBrf0213994-12.coIP.MW
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note

Su(z)12

bait

FLAG tag

Caf1-55

prey
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
interaction domain residues 362,365
mutation decreasing interaction
aa 362,365

D362A,D365A.

interaction domain residues 35,372,373
mutation decreasing interaction
aa 35,372,373

L35S,F372S,I373S.

Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Interaction in vitro; bait and prey copurified from baculovirus and insect cell system.

FBrf0213994-13.PD.WB
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note

Su(z)12

bait

GST tag

Caf1-55

prey
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
interaction domain
sufficient binding region
aa 1-100

coordinates relative to Su(z)12-PB

interaction domain residues 70,73,75
mutation disrupting interaction
aa 70,73,75

R70A,R73A,R75A, coordinates relative to Su(z)12-PB

interaction domain residues 362,365
mutation disrupting interaction
aa 362,365

D362A,D365A.

interaction domain residues 35,372,373
mutation disrupting interaction
aa 35,372,373

L35S,F372S,I373S.

Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Interaction in vitro; bait produced as a recombinant fusion protein in bacterial system; prey produced as recombinant protein in baculovirus and insect cell system.

FBrf0213994-15.ITC
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note

Caf1-55

bait

Su(z)12

prey
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
interaction domain
sufficient binding region
aa 1-100

Kd=24μM.

interaction domain residues 362,365
mutation disrupting interaction
aa 362,365

D362A,D365A Kd>500μM.

interaction domain residues 35,372,373
mutation disrupting interaction
aa 35,372,373

L35S,F372S,I373S Kd>500μM.

Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Interaction in vitro; bait produced as recombinant protein in baculovirus and insect cell system; prey peptide produced as a recombinant fusion protein in bacterial system.

FBrf0214598-3.PD.MW
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note

Su(z)12

bait

Strep tag

Nurf55

prey

His tag

Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
interaction domain
sufficient binding region
aa 93-359
interaction domain
sufficient binding region
aa 1-418
interaction domain
necessary binding region
aa 93-143
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Interaction in vitro; protein produced as recombinant fusion protein in a baculovirus and insect cell system.

FBrf0214598-4.PD.MW
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note

Nurf55

bait

His tag

Su(z)12

prey

Strep tag

Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
interaction domain
sufficient binding region
aa 93-359
interaction domain
sufficient binding region
aa 1-418
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Interaction in vitro; protein produced as recombinant fusion protein in a baculovirus and insect cell system.

FBrf0214598-5.XC
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note

Nurf55

neutral component

His tag

Nurf55

neutral component

His tag

Nurf55

neutral component

His tag

Su(z)12

neutral component

Su(z)12

neutral component

Su(z)12

neutral component
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
interaction domain
sufficient binding region
aa 64-359
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Interaction in vitro; protein produced as recombinant fusion protein in a baculovirus and insect cell system.

FBrf0214598-6.ITC
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note

Nurf55

bait

His tag

Su(z)12

prey
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
NBE domain
sufficient binding region
aa 75-93
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Interaction in vitro; bait produced as a recombinant fusion protein in a baculovirus and insect cell system; prey peptide chemically synthesized.

FBrf0219425-2.CH.MW
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note

Su(z)12

neutral component

Su(z)12

neutral component

Su(z)12

neutral component

NURF55

neutral component

NURF55

neutral component

NURF55

neutral component
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
N-terminal region
mutation disrupting interaction
aa 1-104

deletion

Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Su(z)12, E(z), Caf1 and esc were coexpressed in Sf9 cells and purified as a complex.

Source was baculovirus-infected Sf9 cell extract; proteins produced from transfected constructs.

Su(z)12, E(z), Caf1 and esc form the PRC2 (Polycomb repressive complex 2).

Deletion of the Su(z)12 N-terminal 104 residues results in PRC2 complexes containing Su(z)12, E(z) and esc, but lacking Caf1@.

Residues 507-630 of Su(z)12 are sufficient for the formation of a PRC2 complex lacking Caf1.

External Crossreferences and Linkouts ( 1 )
Linkouts
MIST - An integrated Molecular Interaction Database
References (6)