FB2026_02 , released June 18, 2026
Physical Interaction report
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General Information
Interaction Type
Interacting Genes
FlyBase ID
FBig0000097807
Interaction Network
Interactions Browser links
esc network
Caf1-55 network
Su(z)12 network
Reported Interactions
FBrf0132295-18.PD.WB
Reference
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
esc 

ESC

bait

GST tag

esc 

p55

prey
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
esc 
N-terminal region
sufficient binding region
aa 1-60
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Interaction in vitro; bait produced as a recombinant fusion protein in bacterial system; prey derived from wild-type embryonic nuclear extract.

FBrf0132295-3.coIP.MS
Reference
Description
physical association
Collection
Cell line used
Participants
Corresponds to
Reported as
Role
Note
esc 

ESC

bait

FLAG tag

p55

prey
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

esc, E(z), Rpd3 and Caf1 copurify in a complex with apparent molecular mass of about 600 kDa.

Source was embryonic nuclear extract of transgenic fly line; bait produced from tagged transgenic construct; prey produced from endogenous gene.

Nuclear extract was fractionated by several chromatographic steps, tracking the distribution of esc- and E(z)-containing fractions by western blot. These fractions were then subjected to anti-FLAG immunoprecipitation and component proteins identified by mass spectroscopy. Identity of copurifying proteins confirmed by western blot.

FBrf0132295-4.coIP.WB
Reference
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
esc 

ESC

bait

FLAG tag

p55

prey
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

The association of Caf1 with esc appears to be distinct from other Caf1-containing complexes, since components of other Caf1-containing complexes do not coimmunoprecipitate with esc (for example, Iswi and Caf1-105).

Less than 5% of Caf1 present in embryonic nuclear extracts is present in the esc/E(z)-containing complex.

Source was embryonic nuclear extract of transgenic fly line; bait produced from tagged transgenic construct; prey produced from endogenous gene.

FBrf0132295-9.coIP.WB
Reference
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note

p55

bait
esc 

ESC

prey

FLAG tag

Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Source was embryonic nuclear extract of transgenic fly line; bait produced from endogenous gene; prey produced from tagged transgenic construct.

FBrf0151814-12.CH.WB
Description
physical association
Collection
Cell line used
Participants
Corresponds to
Reported as
Role
Note
esc 

ESC

neutral component
esc 

ESC

neutral component
esc 

ESC

neutral component

p55

neutral component

p55

neutral component

p55

neutral component
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Source was embryonic nuclear extract wild-type fly line; proteins produced from endogenous genes.

The complex of Su(z)12, E(z), Rpd3, esc and Caf1 has an apparent size of 600-650 kDa (gel filtration).

A histone methyltransferase activity was purified from embryonic nuclear extracts.

FBrf0151814-13a.coIP.WB
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note

p55

bait

Myc tag

esc 

ESC

prey

HA tag

Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Interaction in vitro; bait produced as a recombinant fusion protein in baculovirus system; prey produced as a recombinant fusion protein in bacterial system.

FBrf0151815-12.coIP.WB
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
esc 

ESC

bait

FLAG tag

NURF-55

prey
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

esc, E(z), Su(z)12 and Caf1 copurify as part of a polycomb repressive (PRC2) complex.

Source was baculovirus-Sf9 cell system; bait produced from tagged transgenic construct; prey produced from transgenic construct.

FBrf0151815-5.coIP.MS
Description
physical association
Collection
Cell line used
Participants
Corresponds to
Reported as
Role
Note
esc 

ESC

bait

FLAG tag

NURF55

prey
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Source was embryonic nuclear extract of transgenic fly line; bait produced from tagged transgenic construct; prey produced from endogenous gene.

esc, E(z), Su(z)12 and Caf1 copurify as part of a polycomb repressive (PRC2) complex.

Nuclear extract was fractionated on a QAE-Sepharose comlum, then used for FLAG-affinity purification of esc containing complexes.

FBrf0188105-3.PD.MW
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
esc 

ESC

bait

FLAG tag

NURF55

prey
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Interaction in vitro; bait and prey produced recombinant fusion proteins in baculovirus and insect cell system.

Affinity purification of the esc-E(z) complex was carried out from a mixture of esc, E(z), Su(z)12, and Caf1-55 recombinant proteins. Deletion of the VEFS domain of Su(z)12 results in loss of Caf1-55 from the complex. Deletion of E(z) II domain results in loss of Su(z)12 and Caf1-55 from the complex.

FBrf0219425-6.CH.MW
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note

NURF55

neutral component

NURF55

neutral component

NURF55

neutral component
esc 

ESC

neutral component
esc 

ESC

neutral component
esc 

ESC

neutral component
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Su(z)12, E(z), Caf1 and esc were coexpressed in Sf9 cells and purified as a complex.

Su(z)12, E(z), Caf1 and esc form the PRC2 (Polycomb repressive complex 2).

Source was baculovirus-infected Sf9 cell extract; proteins produced from transfected constructs.

FBrf0223458-3.coIP.MW
Reference
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
esc 

ESC

bait

FLAG tag

NURF55

prey
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
VEFS domain N582
mutation disrupting interaction
aa 582

N582Y

Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Source was cell extract of baculovirus-infected Sf9 cell line; bait produced from transfected construct; prey produced from transfected construct.

PRC2 complex of Su(z)12, E(z), esc and Caf1-55.

FBrf0228678-4.coIP.MW
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
esc 

Esc

bait

FLAG tag

Nurf55

prey
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

FLAG-tagged esc was co-expressed with components of the PRC2 complex (Su(z)12, E(z) and Caf1-55) as well as Scm.

Source was cell extract of baculovirus-infected Sf9 cell line; bait produced from transfected construct; prey produced from transfected construct.

FBrf0237084-8.coIP.MW
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
esc 

Esc

bait

FLAG tag

Caf1-55

prey
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Source was nuclear extract of recombinant baculovirus infected Sf9 cells; bait produced from transfected construct; prey produced from transfected construct.

FBrf0238257-1.coIP.MW
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
esc 

ESC

bait

FLAG tag

NURF55

prey
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Source was cell extract of Sf9 cell line; bait produced from baculoviral construct; prey produced from baculoviral construct.

FBrf02585471-9.PD.MW
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
esc 

esc

bait

FLAG tag

Nurf55

prey
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Interaction in vitro; bait and prey produced recombinant fusion proteins in baculovirus and insect cell system.

The PRC2 complex consists of esc, E(z) and Caf1-55.

External Crossreferences and Linkouts ( 1 )
Linkouts
MIST - An integrated Molecular Interaction Database
References (10)