FB2026_02 , released June 18, 2026
Physical Interaction report
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General Information
Interaction Type
Interacting Genes
FlyBase ID
FBig0000100858
Interaction Network
Interactions Browser links
pum network
nanos network
Reported Interactions
FBrf0112045-1.Y3H
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
pum 

Pum

bait

fused to GAL4 DNA-binding domain

pum 

Nos

prey

fused to GAL4 activation domain

Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
pum 
RNA-binding domain
sufficient binding region
aa 1093-1426

coordinates relative to pum-PA

C-terminal region
necessary binding region
aa 288-401

coordinates relative to nos-PA

Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Source was yeast cell line; bait produced as transgenic fusion protein; prey produced as transgenic fusion protein (prey was previously cloned reagent).

Together with hb RNA, the nos and pum proteins form a ternary complex.

Three-hybrid system: yeast GAL4-BD/MS2-SL/GAL4-AD.

FBrf0112045-5.PD.WB
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
pum 

Pum

bait

GST tag

pum 

Nos

prey

His tag

Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
pum 
RNA-binding domain
sufficient binding region
aa 1093-1426

coordinates relative to pum-PA

Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Interaction in vitro; bait produced as a recombinant fusion protein in bacterial system; prey produced as a recombinant fusion protein in bacterial system.

FBrf0135683-2.Y3H
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
pum 

Pum

bait

fused to GAL4 DNA-binding domain

pum 
pum 

Nos

prey

fused to GAL4 activation domain

Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
pum 
Puf domain
sufficient binding region
aa 1092-1411

coordinates relative to pum-PA

pum 
Puf domain residue F1367
mutation disrupting interaction
aa 1367

F1367S, coordinates relative to pum-PA

Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Source was yeast cell line; bait produced as transgenic fusion protein; prey produced as transgenic fusion protein (prey was previously cloned reagent).

Three-hybrid system: yeast GAL4-BD/MS2-SL/GAL4-AD. MS2-SL fused to hb NRE RNA.

FBrf0135777-5.PD.A
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
pum 

Pum

bait

GST tag

Nos

prey

His tag

Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Interaction in vitro; bait produced as a recombinant fusion protein in bacterial system; prey produced as a recombinant fusion protein in bacterial system.

FBrf0193740-3.PD.WB
Reference
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
pum 

Pum

bait

GST tag

pum 

Nos

prey

His tag

Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
pum 
RNAB domain
sufficient binding region

coordinates not reported

C-terminal region
sufficient binding region

coordinates not reported

Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Interaction in vitro; bait produced as a recombinant fusion protein in bacterial system; prey produced as a recombinant fusion protein in bacterial system.

Recombinant GST-pum was mixed with hb RNA (NRE) and nos, brat and eIF4EHP proteins in various combinations.

FBrf0194692-3.PD.WB
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
pum 

Pum

bait

GST tag

Nos

prey

His tag

Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Interaction in vitro; bait produced as a recombinant fusion protein in bacterial system; prey produced as a recombinant fusion protein in bacterial system.

FBrf0215373-2.XL.A
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note

nos

bait

[32]P label

pum 

Pum

prey

His tag

pum 
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
3-prime UTR
sufficient binding region
nt 403-553
pum 
RNA-binding domain
sufficient binding region
unspecified
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Interaction in vitro; bait produced and labeled by in vitro transcription; prey produced as a recombinant fusion protein in bacterial system.

FBrf0215373-3.EMSA.A
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
pum 

Pum

bait

His tag

pum 

nos

prey

[32]P label

Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
3-prime UTR
sufficient binding region
GAUCCACUUUGAAUUUCGAACUGUCAAUCGUAUCAUUAGAAUUUAAUCUU
3-prime UTR
mutation decreasing interaction
GAUCCACUUUGAAUUUCGAACUGUCAAUCGUAUCAUUAGAAUUUAAUCUU

ACUGUCA to CUGAGAC

pum 
RNA-binding domain
sufficient binding region
unspecified
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Interaction in vitro; bait produced as a recombinant fusion protein in bacterial system; prey produced and labeled by in vitro transcription.

FBrf0223419-3.coIP.WB
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
pum 

Pum

bait

Nos

prey
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Source was adult female ovary of mutant fly line; bait produced from endogenous gene; prey produced from endogenous gene.

The pum-nos interaction is abolished by RNase treatment.

Experiments were done in bam[Δ86] mutant ovaries, which contain only undifferentiated pre-cystoblasts.

FBrf0233303-1.XC
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note

Nanos

neutral component

Nanos

neutral component

Nanos

neutral component
pum 

Pumilio

neutral component
pum 
pum 

Pumilio

neutral component
pum 

Pumilio

neutral component
pum 
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
pum 
RNA-binding domain
sufficient binding region
aa 1091-1426

coordinates relative to pum-PA

zinc finger domain
sufficient binding region
aa 289-401

coordinates relative to nos-PA

Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Interaction in vitro; proteins produced as a recombinant fusion proteins in bacterial system.

Ternary complex of nos and pum proteins and hb RNA.

FBrf0233303-5.EMSA.A
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
pum 

Pumilio

neutral component
pum 

Pumilio

neutral component
pum 
pum 
pum 
pum 

Pumilio

neutral component
pum 
pum 
pum 

Nanos

neutral component

Nanos

neutral component

Nanos

neutral component
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
zinc finger domain
sufficient binding region
aa 289-401

coordinates relative to nos-PA

pum 
RNA-binding domain
sufficient binding region
aa 1091-1426

coordinates relative to pum-PA

zinc finger domain residue C354
mutation disrupting interaction
aa 354

C354Y, coordinates relative to nos-PA

zinc finger domain residue C319
mutation disrupting interaction
aa 319

C319Y, coordinates relative to nos-PA

pum 
RNA-binding domain residue F1367
mutation disrupting interaction
aa 1367

F1367S, coordinates relative to pum-PA

pum 
RNA-binding domain residue Q1337
mutation disrupting interaction
aa 1337

Q1337A, coordinates relative to pum-PA

Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Interaction in vitro; bait produced as a recombinant fusion proteins in bacterial system; prey synthesized in vitro.

nos alters pum RNA-binding specificity. Alone, neither nos nor pum bind to CycB or bcd NRE RNA, but together they form ternary complexes. pum can bind to hb NRE2 RNA alone, but nos increases the strength of the interaction.

Interaction of nos and pum protein binding to RNA, alone or in combination, was tested. hb NRE1, CycB NRE and bcd NRE RNAs were used.

FBrf0242377-3.EMSA.A
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
pum 

Pum

neutral component

Halo tag

pum 

Pum

neutral component

Halo tag

pum 
pum 

Pum

neutral component

Halo tag

pum 

Nos

neutral component

Halo tag

Nos

neutral component

Halo tag

Nos

neutral component

Halo tag

Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
pum 
RNA-binding domain
sufficient binding region
aa 1091-1426
interaction domain
sufficient binding region
aa 289-401
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Interaction in vitro; bait produced as a recombinant fusion protein in bacterial system; prey produced as a recombinant fusion protein in bacterial system.

nos, pum and Pen mRNA form a ternary complex. Neither pum nor nos bind Pen mRNA on their own in this assay implying a pum-nos interaction.

External Crossreferences and Linkouts ( 1 )
Linkouts
MIST - An integrated Molecular Interaction Database
References (9)