Biosample: BS_Furlong_E6-8h

General Information

Name

BS_Furlong_E6-8h_mesoderm

Species

D. melanogaster

Biosample type

isolated cells

FlyBase ID

FBlc0001188

Project

Furlong_BiTS-ChIP-Seq

Title

D. melanogaster, embryonic mesodermal nuclei (6-8 hr AEL), source for chromatin.

Accessions

Genetic Background

Strain

Genotype

Key genes

Source Material

Stage

Tissue/Position (including subcellular localization)

Reference

embryonic stage 10 -- 11

mesoderm

• nucleus

Comment: 6-8 hr AEL

(Bonn et al., 2012)

Cell line

Other tissues studied

Other species studied

Biosample Details

Methods

targeted cell labeling

(Bonn et al., 2012)

Transgenic Construct used

P{twi-SBP-His2B}

Sample preparation

A strain expressing mesodermally expressed SBP-tagged His2B was used to label nuclei for subsequent fluorescent "cell" sorting. Two independent biological replicates were used.

(Bonn et al., 2012)

Comments

Files

Additional Information

Related Datasets

Parent projects (1)

Projects

Type

Title

Furlong_BiTS-ChIP-Seq

genome binding

ChIP-Seq profiling of histone modifications in purified embryonic mesodermal cells.

Raw data generated from this biosample (8)

Assay

Type

Title

ChIP-Seq_Furlong_H3K27Ac_E11-12_mesoderm

ChIP-Seq

Chip-Seq of H3K27Ac from D. melanogaster, embryonic mesodermal nuclei (6-8 hr AEL).

ChIP-Seq_Furlong_H3K27me3_E11-12_mesoderm

ChIP-Seq

Chip-Seq of H3K27me3 from D. melanogaster, embryonic mesodermal nuclei (6-8 hr AEL).

ChIP-Seq_Furlong_H3K36me3_E11-12_mesoderm

ChIP-Seq

Chip-Seq of H3K36me3 from D. melanogaster, embryonic mesodermal nuclei (6-8 hr AEL).

ChIP-Seq_Furlong_H3K4me1_E11-12_mesoderm

ChIP-Seq

Chip-Seq of H3K4me1 from D. melanogaster, embryonic mesodermal nuclei (6-8 hr AEL).

ChIP-Seq_Furlong_H3K4me3_E11-12_mesoderm

ChIP-Seq

Chip-Seq of H3K4me3 from D. melanogaster, embryonic mesodermal nuclei (6-8 hr AEL).

ChIP-Seq_Furlong_H3K79me3_E11-12_mesoderm

ChIP-Seq

Chip-Seq of H3K79me3 from D. melanogaster, embryonic mesodermal nuclei (6-8 hr AEL).

ChIP-Seq_Furlong_His3_E11-12_mesoderm

ChIP-Seq

Chip-Seq of total His3 from D. melanogaster, embryonic mesodermal nuclei (6-8 hr AEL).

ChIP-Seq_Furlong_RpII33_E11-12_mesoderm

ChIP-Seq

Chip-Seq of Pol II (RpII33) from D. melanogaster, embryonic mesodermal nuclei (6-8 hr AEL).

Processed data generated from this biosample (8)

Result

Type

Title

ChIP-seq_H3K27Ac_E6-8h_mesoderm

binding site identification

Chip-Seq peak calls for H3K27Ac from D. melanogaster, embryonic mesodermal nuclei (6-8 hr AEL).

ChIP-seq_H3K27me3_E6-8h_mesoderm

binding site identification

Chip-Seq peak calls for H3K27me3 from D. melanogaster, embryonic mesodermal nuclei (6-8 hr AEL).

ChIP-seq_H3K36me3_E6-8h_mesoderm

binding site identification

Chip-Seq peak calls for H3K36me3 from D. melanogaster, embryonic mesodermal nuclei (6-8 hr AEL).

ChIP-seq_H3K4me1_E6-8h_mesoderm

binding site identification

Chip-Seq peak calls for H3K4me1 from D. melanogaster, embryonic mesodermal nuclei (6-8 hr AEL).

ChIP-seq_H3K4me3_E6-8h_mesoderm

binding site identification

Chip-Seq peak calls for H3K4me3 from D. melanogaster, embryonic mesodermal nuclei (6-8 hr AEL).

ChIP-seq_H3K79me3_E6-8h_mesoderm

binding site identification

Chip-Seq peak calls for H3K79me3 from D. melanogaster, embryonic mesodermal nuclei (6-8 hr AEL).

ChIP-seq_His3_E6-8h_mesoderm

binding site identification

Chip-Seq peak calls for total His3 from D. melanogaster, embryonic mesodermal nuclei (6-8 hr AEL).

ChIP-seq_RpII33_E6-8h_mesoderm

binding site identification

Chip-Seq peak calls for Pol II (RpII33) from D. melanogaster, embryonic mesodermal nuclei (6-8 hr AEL).

Synonyms and Secondary IDs (2)

Reported As

Symbol Synonym

BS_Furlong_E6-8h_mesoderm

Name Synonyms

D. melanogaster, embryonic mesodermal nuclei (6-8 hr AEL), source for chromatin.

(Bonn et al., 2012)

Secondary FlyBase IDs

References (2)

Report Sections

Open Close