Gene or accession: CG2666
cDNA or EST error
Comments: I have determined a full length cDNA sequence for the homolog of
CG2666 from Lucilia cuprina.
>From this highly homologous sequence it is easy to delineate the exon/intron
structure
of the Drosophila sequence (CG2666). The latter has been called DmCS-1 and the
former LcCS-1.
You will find that some of your exon annotations at the 5'end of CG2666 are
incorrect probably
due to the presence of both small exons and small introns which confound the
gene prediction programs.
MSNIRHRPLAPPGTGDSDDNFTDDESTPLTQDIYGGSQRTIQETKGWDVF
RDPPIKIETGSTANQECLELTVKILKIFAYIFTFIIVLLGGVVAKGCVLF
MTSQIRKDKRIEYCNKDLGRDKTFVVKLPEEERIAWIWALIIAFSIPEVG
SLIRSARICFFKTFKVPKTGHFLFMFIMESLNTFGTALLMFVVLPQLDAI
QGAMLTNCLCVIPGILGLMSRTSKEGKRFAKMLIDLVAVAAQVTGFVIWP
LLENRKELWVIPVACLMVSCGWWENYVTSQSSFALIRSMGRVKDDLKYTR
YFSHMFLSIWKISLFLCSVLLIYWIQGEEPGNIFGLFSDAFGPHKISVDE
LATTLTNSLPDTLDAADIDSIDIEASYNTVVYVLLIQIFGAYLCYIFGKF
ACKILIQGFSYAFPVSLTVPVAVSLLIAACGIRIDDPCFFHDTIPDYLFF
TSPSNFRSNDFVTNQMAWAWILWLLSQTWIGLHIWTPKCERLATTEKLFV
KPMYCSLLIDQSMAMNRRRDDQADVKTEDLSEIEKEKGDEYYETISVHTD
GSAIQSKPTIKSSDHITRIYSCATMWHVTKDEMIEFLKSIMRMDEDQCAR
RVAQKYLRIVDPDYYEFETHTFFDDAFEISDHSDDDIQVNRFVKLLVATM
DDAASEIHQTRIRIRPPKKYPTPYGGRLVWTLPGKTKFFAHLKDKDRIRH
RKRWSQVMYMYYLLGHRLMELPIPVDRKDTIAENTYLLTLDGDIDFKPNA
VTLLVDLMKKNKNLGAACGRIHPVGSGPMVWYQLFEYAIGHWLQKATEHM
IGCVLCSPGCFSLFRGKALMDDNVMKKYTTQSDEARHYVQYDQGEDRWLC
TLLLQRGYRVEYSAASDAYTHCPEGFNEFYNQRRRWVPSTIANIMDLLGD
AKRTIKINDNISLLYIFYQMMLMGGTILGPGTIFLMLVGAFVAAFRIDNW
TSFHYNIIPILGFMFICFTCKANIQLFVAQVLSTAYALIMMAVIVGTALQ
LGEDGIGSPSAIFLISMVGSSFIAACLHPQEFWCISAGLIYLLSIPSMYL
LLILYSIINLNAVSWGTREVVAKKTKKEMEAEKKAAEEAAKKAKQKSMLG
FLQGGVGNNGDEEGSVEFSLAGLSRCIFCTHGKTSDEKQQLTTIAESLDT
IKNRIDSIEQTINPHDQHSHRHGRRRTTSSGSKDHHLLSSVAEKSGDESE
ESDTDTSVERKQERDFLTNPYWIEDPDLRKGEVDFLSSAELQFWKDLNDK
YLFPIDNDPVEQARIAKDLKELRDSSVFFFFMVNALIVSIVFLLQLNKDN
IHVKWPFGVRTNITYDESTQEVHISKDYLQLEPIGLVFVFFFALILVIQF
TAMLFHRFGTLSHILASTELNFFKKKSEDLSQDALIDKHAVEIVKNLQRL
QGIDGDYDNDSGSGPDRIARRKTIQNLEKARQPRRQIGTLDVAFKKRFMK
LTAEAENNPSTPILTRRLTMRAETIRALEVRKNSVMAERRKSAMQTLGAK
NEYGIAAVSTLNNNGGIPNVRSGRVSNAGINIKDVFNVNGGPSEQIYGSN
NGAVNQGYEHVNEDDDGNSLRLTTRNPPQVTWGTYSSNTGRM
CCATTTGTGTGTAACTAGGCTGATTTGGCCGATGGGGTGTGATCGTGTGT
TGTGTTTGTGTGTAACCGTGGGATATAGAGAGAGATGTCTAATATAAGAC
ATCGCCCTCTGGCCCCACCGGGTACGGGCGACAGTGATGACAACTTTACA
GATGATGAGAGTACACCATTGACACAAGATATTTATGGCGGAAGCCAACG
TACTATACAGGAAACAAAAGGCTGGGATGTATTCAGAGATCCACCCATTA
AAATAGAAACAGGCTCAACGGCAAATCAAGAATGTCTAGAATTAACTGTA
AAAATTTTAAAAATTTTCGCCTATATCTTTACGTTTATAATCGTATTGTT
GGGAGGTGTGGTGGCAAAAGGCTGTGTATTATTTATGACATCACAAATCC
GTAAAGATAAGAGAATAGAATACTGTAATAAAGATTTAGGTCGTGATAAA
ACATTTGTGGTTAAATTACCCGAAGAAGAACGTATAGCCTGGATCTGGGC
TTTAATTATAGCCTTCTCGATACCCGAAGTGGGTTCTCTTATACGTTCGG
CTCGTATTTGTTTCTTCAAAACTTTTAAAGTTCCCAAGACGGGTCATTTT
CTATTTATGTTTATTATGGAATCTTTGAATACCTTTGGTACTGCTCTTTT
AATGTTTGTTGTTTTGCCGCAATTGGATGCCATCCAGGGAGCCATGTTAA
CGAATTGTTTATGTGTTATACCCGGTATTTTAGGCTTGATGTCACGCACC
AGCAAAGAGGGTAAACGTTTTGCCAAAATGTTAATTGATTTAGTGGCAGT
AGCTGCTCAGGTAACCGGTTTTGTTATATGGCCTCTATTGGAGAATCGTA
AAGAGTTGTGGGTTATACCAGTGGCTTGTCTAATGGTCTCGTGTGGCTGG
TGGGAGAATTATGTTACTTCACAATCTTCATTTGCCTTAATAAGATCTAT
GGGCCGAGTTAAGGATGATTTGAAATATACCAGATATTTCAGTCACATGT
TTTTATCTATATGGAAAATTTCCCTATTCTTGTGTTCCGTGCTGTTGATC
TATTGGATTCAGGGTGAGGAACCAGGCAATATCTTTGGTTTATTCAGTGA
TGCTTTTGGGCCTCATAAGATATCTGTAGATGAATTGGCTACCACCTTGA
CCAACAGTTTACCCGATACCCTAGATGCTGCCAATATAGATAGTATTGAT
ATCGAGGCTTCCTATAATACAGTGGTCTATGTTTTGCTGATCCAAATATT
CGGCGCTTATCTTTGTTATATTTTTGGCAAATTCGCTTGTAAGATTTTAA
TCCAAGGTTTCAGTTATGCCTTTCCGGTCAGTTTGACCGTACCCGTTGCT
GTGTCTTTGTTGATAGCGGCTTGCGGTATTAGAATAGATGATCCCTGCTT
CTTCCATGATACCATACCAGATTATTTGTTCTTTACAAGTCCCTCCAACT
TTAGATTTAATGATTTTGTTACTAATCAAATGGCTTGGGCTTGGATCTTG
TGGTTATTGTCACAGACCTGGATTGGCTTACATATATGGACACCTAAATG
TGAACGTTTAGCCACAACAGAGAAATTATTTGTAAAACCCATGTATTGCT
CTCTGCTGATCGATCAATCTATGGCCATGAATAGGAGGAGAGATGATCAG
GCTGATGTGAAAACTGAGGATAACAATTTAATTTTAAAACAATTTAACTA
TTTACAGGATCTTTCGGAAATTGAAAAGGAAAAGGGAGACGAATACTATG
AAACCATTTCTGTACACACCGATGGCTCGGCCATACAAAGTAAGCCCACC
ATTAAGTCTTCCGATCATATAACCAGAATCTATTCTTGCGCTACTATGTG
GCATGAAACAAAAGATGAGATGATAGAGTTTTTAAAGAGTATCATGCGTA
TGGATGAAGATCAGTGTGCTCGTAGAGTTGCTCAGAAGTATCTGAGAATT
GTCGATCCCGATTATTATGAATTTGAAGCTCACACTTTCTTCGATGATGC
TTTTGAAATTTCCGATCACAGTGATGACGATATCCAGGTAAATCGTTTCG
TCAAACTTTTGGTAGCTACCATGGATGATGCCGCCTCTGAAATTCATCAG
ACCAGAATACGTTTGCGTCCGCCCAAGAAATATCCCACACCCTATGGTGG
TCGTTTGGTTTGGACTCTACCCGGTAAAACAAAATTCATTGCTCATTTAA
AAGACAAAGATCGTATTCGTCATCGTAAACGTTGGTCTCAAGTCATGTAC
ATGTACTATCTGTTGGGTCATCGTCTCATGGAACTGCCTATACCCGAGGA
TCGTAAAGATACCATAGCCGAAAATACTTATCTCTTGACCTTGGATGGTG
ATATTGATTTCAAACCAAATGCTGTAACTTTACTGGTGGATTTGATGAAA
AAGAACAAGAATTTAGGTGCTGCCTGTGGTCGCATTCATCCTGTGGGCTC
TGGTCCTATGGTGTGGTATCAGCTGTTCAAATATGCTATTGGTCATTGGC
CTCAAAAGGCCACCGAACATATGATTGGTTGTGTACTTTGTAGTCCCGGT
TGTTTCTCACTTTTCCGTGGCAAAGCCTTGATGGACGATAATGTTATGAA
GAAATATACCACGCAATCCGATGAAGCTCGTCATTATGTACAATACGATC
AGGGAGAAGATCGTTGGTTGTGTACTTTGCTTTTGCAGCGTGGTTATCGT
GTCGAATATTCAGCTGCCTCCGATGCCTACACTCACTGTCCCGAAGGTTT
TAATGAATTCTACAATCAACGTCGTCGCTGGGTACCCTCGACCATTGCCA
ATATTATGGATTTGCTAGGCGATGCCAAACGTACGATTAAGATTAATGAC
AACATTTCACTGCTCTATATCTTCTATCAAATGATGTTAATGGGTGGTAC
TATTCTTGGACCTGGTACGATTTTCCTTATGTTGGTGGGTGCTTTTGTGC
TGCCTTCCGTATCGACAATTGGACTTCTTTCCATTACAATATCAATTCCG
ATTCTGGGCTTCATGTTTATCTGTTTCACATGTAAGGCCAATATACAACT
GTTTGTGGCTCAGGTTCTGTCAACGGCATATGCTCTCATTATGATGGCTG
TCATTGTGGGTACGGCTTTGCAGTTAGGCGAGGATGGTATAGGTTCTCCG
TCGGCCATTTTCTTGATATCTATGGTGGGGTCGTCCTTTATAGCGGCGTG
TTTACATCCGCAGGAGTTTTGGTGTATATCAGCGGGTCTCATCATATTTA
CGTGTCCAAACCAAACGACCACCATAATCAC