Gene or accession: CG13788
Release: 1
Gene annotation error
Gene CG13788 should be split.
Comments: CG13788 may need splitting in 2.
http://cpmcnet.columbia.edu/dept/neurobeh/axel/gr.html
(being curated as Scott and Axel, 2001.4.25, personal communication to FlyBase)
describe 2 gustatory receptor (Gr) genes: 'Gr28A4' and 'GrLU2=Gr28A3'
Gr28A4 sequence matches the N terminal portion of CG13788.
GrLU2=Gr28A3 sequences matches the C terminal portion of CG13788,
suggesting either that the CG13788 annotation needs splitting in two,
or that Gr28A4 and GrLU2=Gr28A3 need merging.
alignments of the 2 Gr genes to CG13788 follow in e-mail to flybase-updates
Gillian
Subject: CG13788 alignments (for FlyBase error report)
here are alignments
Query= Gr28A4 , 415 bases, C04ED3E5 checksum.
(415 letters)
Database: aa_gadfly.dros
14,080 sequences; 6,850,524 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
CG13788|FBan0013788|CT33277|FBan0013788  last_updated:000321  1863 1.1e-193 1
CG13787|FBan0013787|CT33276|FBan0013787  last_updated:000321  206 1.5e-15 1
CG10346|FBan0010346|CT29062|FBan0010346  last_updated:000321  70 0.992 1
CG5755|FBan0005755|CT18089|FBan0005755  last_updated:000321  68 0.994 1
>CG13788|FBan0013788|CT33277|FBan0013788  last_updated:000321 
Length = 1227
Score = 1863 (655.8 bits), Expect = 1.1e-193, P = 1.1e-193
Identities = 368/415 (88%), Positives = 368/415 (88%)
Query: 1 MIRCGLDIFRGCRGRFRYWLSARDCYDSISLMVAIAFALGITPFLVRRNALGENSLEQSW 60
MIRCGLDIFRGCRGRFRYWLSARDCYDSISLMVAIAFALGITPFLVRRNALGENSLEQSW
Sbjct: 1 MIRCGLDIFRGCRGRFRYWLSARDCYDSISLMVAIAFALGITPFLVRRNALGENSLEQSW 60
Query: 61 YGFLNAIFRWLLLAYCYSYINLRNESLIGYFMRNHVSQISTRVHDVGGIIAAVFTFILPL 120
YGFLNAIFRWLLLAYCYSYINLRNESLIGYFMRNHVSQISTRVHDVGGIIAAVFTFILPL
Sbjct: 61 YGFLNAIFRWLLLAYCYSYINLRNESLIGYFMRNHVSQISTRVHDVGGIIAAVFTFILPL 120
Query: 121 LLRKYFLKSVKNMVQVDTQLERLRSPVNFNXXXXXXXXXXXXXXXXXXXXXXXXXXXXAK 180
LLRKYFLKSVKNMVQVDTQLERLRSPVNFN AK
Sbjct: 121 LLRKYFLKSVKNMVQVDTQLERLRSPVNFNTVVGQVVLVILAVVLLDTVLLTTGLVCLAK 180
Query: 181 MEVYASWQLTFIFVYELLAISITICMFCLMTRTVQRRITCLHKFDFATMSALRRVRKYFI 240
MEVYASWQLTFIFVYELLAISITICMFCLMTRTVQRRITCLHKFDFATMSALRRVRKYFI
Sbjct: 181 MEVYASWQLTFIFVYELLAISITICMFCLMTRTVQRRITCLHKFDFATMSALRRVRKYFI 240
Query: 241 SSQVYEALRPLFFLTFLYGLTPFHVVRRKMGESYLKMSCFGVFNXXXXXXXXGFCYISSL 300
SSQVYEALRPLFFLTFLYGLTPFHVVRRKMGESYLKMSCFGVFN GFCYISSL
Sbjct: 241 SSQVYEALRPLFFLTFLYGLTPFHVVRRKMGESYLKMSCFGVFNIFIYICLCGFCYISSL 300
Query: 301 RQGESIVGYFFRTEISTIGDRLQIFNGLIAGAVIYTSAILKRCKLLGTLTILHSLDTNFS 360
RQGESIVGYFFRTEISTIGDRLQIFNGLIAGAVIYTSAILKRCKLLGTLTILHSLDTNFS
Sbjct: 301 RQGESIVGYFFRTEISTIGDRLQIFNGLIAGAVIYTSAILKRCKLLGTLTILHSLDTNFS 360
Query: 361 NIGVRVKYSRIFRYSXXXXXXXXXXXGVYFVGVFRLLVSLDVTPSFCVCMTFFLQ 415
NIGVRVKYSRIFRYS GVYFVGVFRLLVSLDVTPSFCVCMTFFLQ
Sbjct: 361 NIGVRVKYSRIFRYSLLVLIFKLLILGVYFVGVFRLLVSLDVTPSFCVCMTFFLQ 415
Query= GrLU2=Gr28A3 , 365 bases, 9132649A checksum.
(365 letters)
Database: aa_gadfly.dros
14,080 sequences; 6,850,524 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
CG13788|FBan0013788|CT33277|FBan0013788  last_updated:000321  1687 4.8e-175 1
>CG13788|FBan0013788|CT33277|FBan0013788  last_updated:000321 
Length = 1227
Score = 1687 (593.9 bits), Expect = 4.8e-175, P = 4.8e-175
Identities = 337/365 (92%), Positives = 337/365 (92%)
Query: 1 MWLLRRSVGKSGNRPHDVYTCYRLTIFMALCLGIVPYYVSISSEGRGKLTSSYIGYINII 60
MWLLRRSVGKSGNRPHDVYTCYRLTIFMALCLGIVPYYVSISSEGRGKLTSSYIGYINII
Sbjct: 863 MWLLRRSVGKSGNRPHDVYTCYRLTIFMALCLGIVPYYVSISSEGRGKLTSSYIGYINII 922
Query: 61 IRMAIYMVNSFYGAVNRDTLMSNFFLTDISNVIDALQKINGMLGIFAIXXXXXXXXXXXX 120
IRMAIYMVNSFYGAVNRDTLMSNFFLTDISNVIDALQKINGMLGIFAI
Sbjct: 923 IRMAIYMVNSFYGAVNRDTLMSNFFLTDISNVIDALQKINGMLGIFAILLISLLNRKELL 982
Query: 121 XXXATFDRLETEAFPRVLKNLAHQWDTRSLKAVNQKQRSLQCLDSFSMYTIVTKDPAEII 180
ATFDRLETEAFPRVLKNLAHQWDTRSLKAVNQKQRSLQCLDSFSMYTIVTKDPAEII
Sbjct: 983 KLLATFDRLETEAFPRVLKNLAHQWDTRSLKAVNQKQRSLQCLDSFSMYTIVTKDPAEII 1042
Query: 181 QESMEIHHLICEAAATANKYFTYQLLTIISIAFLIIVFDAYYVLETLLGKSKRESKFKTV 240
QESMEIHHLICEAAATANKYFTYQLLTIISIAFLIIVFDAYYVLETLLGKSKRESKFKTV
Sbjct: 1043 QESMEIHHLICEAAATANKYFTYQLLTIISIAFLIIVFDAYYVLETLLGKSKRESKFKTV 1102
Query: 241 EFVTFFSCQMILYLIAIISIVEGSNRAIKKSEKTGGIVHSLLNKTKSAEVKEKLQQFSMQ 300
EFVTFFSCQMILYLIAIISIVEGSNRAIKKSEKTGGIVHSLLNKTKSAEVKEKLQQFSMQ
Sbjct: 1103 EFVTFFSCQMILYLIAIISIVEGSNRAIKKSEKTGGIVHSLLNKTKSAEVKEKLQQFSMQ 1162
Query: 301 LMHLKINFTAAGLFNIDRTLYFTISGALTTYLIILLQFTXXXXXXXXXXXXXCCETFNNM 360
LMHLKINFTAAGLFNIDRTLYFTISGALTTYLIILLQFT CCETFNNM
Sbjct: 1163 LMHLKINFTAAGLFNIDRTLYFTISGALTTYLIILLQFTSNSPNNGYGNGSSCCETFNNM 1222
Query: 361 TNHTL 365
TNHTL
Sbjct: 1223 TNHTL 1227