FlyBase Natural Transposon Report: Dmel\Tc1

General Information

Symbol

Tc1

Species

D. melanogaster

Feature type

natural_transposable_element

FlyBase ID

FBte0000927

Sequences and Components

Complete element (bp)

1666

(Kaminker et al., 2002)

Terminal repeat (bp)

Reference sequence

transposon_sequence_set.fa.gz transposon_sequence_set.gff.gz

Component genes

Sequence Accessions

GenBank Nucleotide - A collection of sequences from several sources, including GenBank, RefSeq, TPA, and PDB.

AJ441085

Sequence Ontology (SO)

Transposon type

terminal_inverted_repeat_element

(Lipatov et al., 2005, Dimitri et al., 2003, Kaminker et al., 2002, Dimitri et al., 1999)

transposable_element

(Levis, 2001.2.1)

Insertions and Copy Number

Copy number and comments

21 in euchromatin of Release 3 genome annotation, of which 1 is full length.

(Kaminker et al., 2002)

Search for

Target Site Duplication

Size (bp)

Orthologs

Curated drosophilid orthologs

Comments

"CG3013" and "CG17501" show homology to transposons and are part of a transposon-related repetitive element family.

(Levis, 2001.2.1)

Tc1-like element.

(Dimitri et al., 1999)

construct_comment: Tc1-like element.

(FlyBase, 1992-)

Other Information

Etymology

External Crossreferences and Linkouts ( 1 )

Crossreferences

GenBank Nucleotide - A collection of sequences from several sources, including GenBank, RefSeq, TPA, and PDB.

AJ441085

Synonyms and Secondary IDs (7)

Reported As

Symbol Synonym

CG17501

(Levis, 2001.2.1)

CG3013

(Luschnig, 2003.12.17, Levis, 2001.2.1)

Mercurio

(Dimitri et al., 2003, Dimitri et al., 1999, FlyBase, 1996-)

TC1

(Rigal et al., 2022, Sytnikova et al., 2014, Hamilton et al., 2009)

TC1_DM

(Slawson et al., 2006)

Tc1

(Cancian et al., 2025, Mostoufi and Singh, 2024, Bologa et al., 2023, Wierzbicki et al., 2023, Kordyukova et al., 2020, Mérel et al., 2020, Villanueva-Cañas et al., 2019, Kofler et al., 2015, Kofler et al., 2012, Petrov et al., 2011, Deloger et al., 2009, Kawamura et al., 2008, Riddle et al., 2008, Smith et al., 2007, Slawson et al., 2006, Lipatov et al., 2005, Dimitri et al., 2003)

mercurio

(Arca, 2002.4.5)

Secondary FlyBase IDs

FBgn0039949
FBgn0033004
FBtp0011450
FBgn0026410
FBtp0017052

References (31)

Report Sections

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