FB2026_03 , released September 17, 2026
Recombinant Construct: P{GFP.RS(I-SceI).SSA}
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General Information
Symbol
P{GFP.RS(I-SceI).SSA}
FlyBase ID
FBtp0170923
Feature type
transgenic_transposable_element
Component Allele(s)
Size
Expression Data
Associated insertion(s)
Molecular map
Description and Uses
Description

Transgene designed as a reporter of DNA double-strand break (DSB) repair by single-strand annealing. It contains a ubiquitin promoter upstream of two copies of GFP separated by a RS(I-SceI) site. A stop codon is present between the first copy of GFP and the RS(I-SceI) site, thus in the original construct only the first GFP coding sequence is translated, while the second GFP sequence forms part of the 3'UTR. Little or no GFP protein is expressed, probably due to the transcript being targeted by nonsense mediated decay due to the long 3'UTR. If a DSB is induced at the RS(I-SceI) site by the I-SceI endonuclease, the break can be repaired by non-homologous end-joining (NHEJ) or by single-strand annealing (SSA). Repair by NHEJ does not result in an increase in GFP protein. Repair by SSA removes one copy of the GFP coding sequence, shortening the 3'UTR and resulting in a substantial increase in the production of GFP protein.

Construct components
Component
Use(s)
Encoded product / tool
Sequence Data
Sequence (FB)
Associated Sequence Data
DNA Sequence
Extent
Segments and Size
Total Size
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Right end
 
Segments
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Orientation
Symbol
Reference
Phenotypic Data
Component Allele
Phenotypic Data
Expression Data
Reporter Expression
Additional Information
Statement
Reference
 
Marker for
Reflects expression of
Reporter construct used in assay
Progenitors and Descendants
progenitor(s)
descendant(s)
Comments
Stocks (0)
Stocks containing insertion(s) of this recombinant construct
External Crossreferences and Linkouts ( 0 )
Synonyms and Secondary IDs (1)
Reported As
Symbol Synonym
P{GFP.RS(I-SceI).SSA}
Secondary FlyBase IDs
    References (2)