FB2026_01 , released March 12, 2026
FB2026_01 , released March 12, 2026
Transcript: Dmel\Upf1-RA
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General Information
Symbol
Dmel\Upf1-RA
Species
D. melanogaster
Annotation Symbol
CG1559-RA
FlyBase ID
FBtr0073596
Feature type
mRNA
Associated gene
Dmel\Upf1
Evidence Rank
Length (nt)
5187
Evidence Score
Genomic Location
Genomic Maps
cDNA Clones Consistent with the Transcript ( 26 )
cDNA Clones, Fully Sequenced
Exact Match
    Contained within the annotated transcript, internally consistent
    End(s) extend beyond the annotated transcript, internally consistent
      cDNA Clones, End Sequence Only (ESTs)
      Contained within the annotated transcript, internally consistent
      End(s) extend beyond the annotated transcript, internally consistent
        Sequence
        Sequence Downloader
        GATAGACCCCTCGTGAGTCAAATGCAAACTGACGTATATTTATTACTGGCAAAACAGGCCGGGCAAATTTGTTGAACAAG
CAAGAAAGTTTTCGCTTTTTTTAATCCTACATTCCCCGCAATAGCGTGGGAATCTCGTACAGACTCAATTTAAAACACAC
AACAGCCACAGTTTCGAAAGAGTGCCGAACGGCGGGCTCCCGAACACGGAAAGCGCGAAACGCACACACGACACCATCGC
CATACCATAATCATCGCGGCCACGCTCCAAGCTTAGGAATTTTTCAATTCCGGAAACACTGACCAAGCGATCCGTGGTCT
AGGAGCAGGTACTATAGATCTCATCGCGATCCCTGCGGAAACGCAGCATAATCACCTTGGGTGAGAAGAAACAACAGGCG
CCATGAGCGTGGACACGTACGCGCCCAGCTCGGCGCTCTCGTTCCTGGACATGGACGACAACGAGCTGCTTCCGGGAGCG
GATACTCAACCCACGCAGTACGATTACCGCGACTTTACCATGCCCTCCACCTCGCAGAGCCAGACCCAGAACGATCAGCT
GGAGATTGCCCAACGCTGCTCTGCCGGAGACTCGCATCCACGACTGGCCAGCATCACCAACGATCTGGCCGATCTGCAGT
TCGAAGAGGAGGACGACGAGCCTGGCAGCTCGTATGTGAAGGAGCTGCCGCCGCATGCGTGCAAGTATTGCGGCATCCAT
GATCCAGCCACGGTGGTCATGTGCAACAACTGCCGCAAATGGTTTTGCAACGGTCGTGGAAGCACTTCCGGTTCGCACAT
CATCAACCATCTGGTGAGGGCCAAGCATCGCGAGGTGACGCTCCACGGGGAAGGTCCCCTGGGCGAGACAATCCTGGAGT
GCTACTCCTGTGGTGTGCGCAACGTCTTTGTGCTGGGCTTCATTCCGGCCAAGGCCGATTCTGTGGTCGTGCTGCTCTGC
CGTCAGCCGTGTGCCGCCCAGAATTCGCTAAAGGATATGAACTGGGACCAGGAACAGTGGAAGCCTCTAATTGCAGACCG
CTGCTTTTTGGCCTGGCTGGTAAAGCAACCCAGCGAACAGGGACAGCTGCGAGCTCGCCAAATCTCAGCCGCTCAGATCA
ACAAGCTGGAGGAGCTATGGAAGGAGAATATTGAGGCCACGTTTCAGGATCTGGAGAAGCCAGGCATTGACTCGGAGCCA
GCACATGTGCTACTCCGCTACGAGGATGGCTATCAGTACGAGAAGACCTTTGGGCCGCTGGTCCGCCTTGAGGCCGAATA
CGACCAAAAACTGAAGGAGTCTGCCACGCAGGAGAACATCGAAGTACGCTGGGACGTCGGCCTCAACAAAAAGACCATTG
CCTACTTTACGCTGGCGAAGACCGATTCGGACATGAAGCTCATGCATGGCGACGAGCTGCGCCTGCATTATGTGGGCGAG
CTGTACAATCCGTGGAGCGAGATCGGCCACGTTATCAAGGTGCCGGACAATTTCGGCGATGACGTCGGCCTGGAGCTGAA
ATCCTCAACGAATGCCCCGGTTAAGTGCACCAGTAACTTTACGGTGGACTTCATCTGGAAGTGCACGTCATTTGATCGCA
TGACACGTGCTCTGTGCAAATTCGCCATCGATCGCAATTCAGTGTCGAACTTCATCTACTCGCGCCTGTTGGGCCACGGT
CGTGCGGATTCCAACGACGAGGTGCTGTTCCGCGGCCCACAACCCAAGCTCTTCAGTGCCCCGCATCTGCCGGATTTGAA
TCGCAGCCAGGTGTATGCCGTGAAACACGCGCTTCAGCGTCCGCTCTCGCTAATCCAAGGGCCGCCTGGCACGGGCAAAA
CCGTGACCTCGGCGACCATCGTTTACCAGCTGGTCAAGCTCCATGGTGGCACAGTGCTGGTGTGCGCTCCCAGCAACACG
GCCGTGGATCAGCTAACTGAGAAGATCCACCGAACAAACCTTAAAGTGGTGCGTGTTTGCGCCAAGAGCCGTGAGGCCAT
CGATAGCCCGGTAAGCTTCCTGGCGCTGCACAACCAAATCCGTAACATGGAGACCAACTCGGAGCTAAAGAAGCTGCAGC
AGCTGAAAGACGAGACCGGCGAGCTGAGCTCAGCAGACGAAAAGCGATACCGCAACCTGAAACGTGCCGCCGAGAACCAA
CTGCTGGAGGCTGCCGACGTTATCTGCTGCACATGCGTAGGCGCCGGCGATGGTCGTCTATCGCGAGTCAAGTTCACCTC
GATCCTGATCGATGAGTCTATGCAGTCGACGGAGCCGGAGTGCATGGTGCCAGTGGTGCTGGGCGCTAAGCAGCTGATCC
TCGTGGGCGATCACTGCCAGCTGGGACCGGTTGTTATGTGCAAGAAAGCAGCTCGTGCCGGCCTCTCGCAAAGTTTGTTC
GAGCGCCTGGTGGTTCTGGGCATCCGTCCGTTCCGGCTGGAGGTGCAATATCGCATGCACCCCGAGCTGTCCCAGTTCCC
GTCCAACTTCTTCTACGAGGGATCGCTGCAAAACGGCGTCTGCGCGGAGGATCGTCGCCTTAAGCTTGATTTCCCCTGGC
CACAGCCGGAGAGACCGATGTTCTTTCTGGTAACACAGGGACAGGAGGAGATTGCCGGCTCCGGCACCTCTTTCCTCAAC
CGCACAGAGGCGGCCAACGTGGAAAAGATTACGACGCGATTCCTTAAGGCAGGCATCAAGCCGGAACAAATTGGAATCAT
CACGCCTTACGAAGGTCAGCGCGCTTACCTGGTGCAGTACATGCAATACCAGGGCAGCCTGCACTCTCGTCTATACCAGG
AGATCGAGATCGCCAGTGTGGACGCGTTCCAGGGACGTGAGAAGGACATCATTATCATGTCTTGCGTGCGATCTAACGAA
CGTCAAGGCATCGGCTTTTTGAACGACCCACGTCGCCTTAATGTTGCCCTTACACGGGCCAAGTTCGGGATCATCATTGT
GGGCAATCCCAAAGTGCTCGCCAAGCAGCAGCTGTGGAACCATCTGCTCAACTTCTACAAGGACCGTAAGGTGCTCGTCG
AGGGATCTCTGAATAACCTTAAGGAGTCGCTAATCCACTTCCAGAAGCCCAAAAAGCTTGTCAACAGCATGAACATTGGG
GCACACTTTATGTCCACCATTATTGCCGATGCCAAGGAAGTGATGGTGCCAGGCTCCATTTACGACCGCAGTGGCGGTTA
CGGCCAAGGTCGCCAAATGGTGGGACAGTCAATGAATGGCGGACAGTACGGTGGCAGTGGAGGTGGTCCCTACGGAAACT
CACCCCTCGGCTACGGTACTCCCAGCTCCAATTCCATGGTGGGCTTTGGCCTGGGCAACGGAGGCAATGGCGCGGCCGGT
GGCAACAACAACTTCGGAGGGGCTGGACCCAGTTGGGCGGCTGCCCACCTCCACCACGACTCCATTGGCTATATATCCAA
CGAGCATGGAGCAGCAGCACTGGGCAACATGCCAGTTCCGGTTGGCATGTTCATGAACATGAGCAATATTCCGCCGCGTT
TCTACAACCAGCACCAGCAGGCGATCATGGCGGTCAAGCAGAATCGCGCCATTCAACAACAGACGGGTAATTTCTCTCCC
GGTAACTCGGGTCCTGGAGTCACTGGAGTCGGAGTCGGACGAAGCGCCACCCCAGGCGGCAATAAGAAGACCAACAAGCT
GGGAAAATCGCGCGTAACGGGCGGTGGAACTGGCGGGGCACCGCTAACACAAGGAAGCTCGGTATGCAATGCTGCTCCAT
ACAGTCAGCACCCGATGCCTTTGTCGCTGCAGATGACCCAGCCCAGCGGATTTGCTCTGTCCCAGCAGCCGGAACTTTCA
CAGGACTTTGGGCAAATATCGCAGATGGACGGTTTGCTATCCCAGGATGTTGCCTTTAACGCGTCGGGCGAGCGGAGCTT
GAATCAGTTCTCACAGCCTTATTGAGAATCCGGTTGGAGGTGCAACAACTACAAACGATAACAAGCAACACAAACGAAAC
AACAACAAACTCAACTTTGAAGTCATCATCAAGGAGTAGCATCAGTAGGCAGCAGGAAAAAGCAGAGAGGACCATCACGG
GAACAACGACAGATGCGGGAAACAATGCGACCTAAGAACATTAGGACAAAGCGGGACATTAAAAGATGGCAAATCGAGAC
GAGGCAGCGTGATAGATGGAGACGGATATGGCAAGATGTGGAGTTACAAAGTAATAAAGAAGACTGAGACGGGAGAGAGA
TGTCGAAAGATCGAAATATCGAGAGCAAATCACTGTAGGCTGCCAGGATGCACAGCTGCAGTTGCTGTTTCCGTAGCGCC
GCGGGCCATGGAGTCATAGCCAGGCGACATGCCATTGGCCACCGGCCATTGGCCATTGGTCACGAGTGCGCTCCCGAGAC
GGAGTTCGCCCACGGATGAGCCAATCTGCCAGCAAGGCGCCACACAAGATGGACAACTTCTCGACACGTTTCTTTTCTCT
TTTGCCAGCCCAGGATTCGCAGCCGGAGCCTAACAAAGACGCAATCACTCCCGCCCAGGACATGTATTCACCAAGTGGCT
TATCTTCTAACCTTCTTCTGGCCTCTAGTGCAGCAGCCAATCTTTAGCTCCTGTTTTAACATTTTCCCACCCAAAGCGGT
TTATACCGATCCCCATATATGTATGCCCACTGTTGTACATTTTTGGACTCTTTTTTGATGCATTTGTTATCCTAACAAAC
ACGAAAACAAAATCAAACAAAAACAAGGAAAATCACGCAAACAAAGAATCAAGACGAAACAAAATCAAATTTAAAAAACA
TGGATACACCATTTATAATCGCTCGGGAACGCTGGCGGATCCCCCCAAGCGGATGCAGGCTTCCAGCGCAGTTCGGATAT
CGAATGGTTGATAGGAAAACGCATTGCGATTTACCGATCTACATAGGTACACTACAAAAAAAAAAACACCACAAAAAAAC
AGGCGAACATTAACAAACTGAACCAACGGAGTAAATGATCAGGATCAGAAAAGGTTAGTTATTAATAATATTAATGCAGT
TACAGATGCCTGATCATTGTTTTTAAAACGACATGAAAATCGTATATATTTTCTATATATTGTCAGTTAATTCTTCCTCC
ATGCGACTCTTTGTATCAAGAAAATGGAACATTTTGTTTGAAATTCAAAATAAAGAATTCCCTTGCG
        Other Products of this Gene
        Other Transcripts
        Name
        FlyBase ID
        Length (nt)
        Upf1-RB
        FBtr0342744
        4709
        Polypeptides
        Derived from THIS transcript
        Name
        FlyBase ID
        Length (aa)
        Upf1-PA
        FBpp0073433
        1180
        Derived from OTHER transcripts
        Name
        FlyBase ID
        Length (aa)
        Upf1-PB
        FBpp0309612
        1180
        Comments

        Extended 3' UTR based on RNA-Seq and/or EST data.

        External Crossreferences and Linkouts ( 1 )
        Crossreferences
        RefSeq - A comprehensive, integrated, non-redundant, well-annotated set of reference sequences including genomic, transcript, and protein.
        Synonyms and Secondary IDs (2)
        Reported As
        Symbol Synonym
        CG1559-RA
        (FlyBase, 1996-)
        Upf1-RA
        (FlyBase, 1996-)
        Secondary FlyBase IDs
          References (2)