FB2026_03 , released September 17, 2026
Transcript: Dmel\Hr39-RA
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General Information
Symbol
Dmel\Hr39-RA
Species
D. melanogaster
Annotation Symbol
CG8676-RA
FlyBase ID
FBtr0081480
Feature type
mRNA
Associated gene
Dmel\Hr39
Evidence Rank
Length (nt)
3291
Evidence Score
Genomic Location
Genomic Maps
cDNA Clones Consistent with the Transcript ( 220 )
cDNA Clones, Fully Sequenced
Exact Match
    Contained within the annotated transcript, internally consistent
      End(s) extend beyond the annotated transcript, internally consistent
        cDNA Clones, End Sequence Only (ESTs)
        Contained within the annotated transcript, internally consistent
        End(s) extend beyond the annotated transcript, internally consistent
        Sequence
        Sequence Downloader
        ACATTTTGCTACTTCGTCGCAGGCGGGACTGTGTTGCGTCGTGTGATCGCTAGAGCGGTTGTGGAATCGGATTCGAGCGC
AAAACACCGTTCATGCTGTGAAAAATCCGATATTTGTCGTGCAATAATTTCCTCGATTGGCATCAAGTGGCTTCCAGTCG
GGTACATATTGCACAAGAAATGTTATACGCATAATGTGCACGCAAATTAAACGAATTCTCTATGAAAATGTGACTAGAAT
GTGAGTCGAACAAAACGAGTAAAACGTGAAATCCCAACTGGCTTTTGGGTAACAAATCTTATCAACACAGCAACGGAAAT
ACATTAAAATCTTGATAGACTGAGAAAGGGACAATTGGAATACTTTTAGTTATTTTTAAATGTTTTACAACACAATGGAA
CTGCATCAACGACACCTCTCAAACTTTTACAAATTGCACAACTGAGAAATAGTCTTTGATAAATAAATAAAATATAAGAA
ATCGCTACTGAAACAAGATGCCAAACATGTCCAGCATCAAAGCGGAGCAGCAAAGCGGTCCTCTTGGAGGAAGTAGCGGC
TATCAAGTACCGGTCAACATGTGCACCACCACAGTCGCGAATACGACGACCACTTTGGGAAGCTCCGCCGGGGGAGCCAC
TGGCTCCCGGCACAACGTCTCCGTGACAAACATCAAGTGCGAACTAGACGAACTACCGTCACCGAACGGCAACATGGTGC
CGGTTATCGCAAACTACGTTCACGGTAGCTTGCGCATTCCACTCAGTGGACATTCAAATCATAGGGAGTCCGATTCGGAG
GAGGAGCTGGCAAGTATTGAGAACTTGAAGGTTCGGCGAAGGACGGCGGCGGACAAAAATGGTCCTCGTCCAATGTCCTG
GGAGGGCGAGCTGAGCGATACTGAGGTCAACGGGGGCGAAGAGCTGATGGAAATGGAGCCAACAATTAAGAGTGAGGTGG
TCCCTGCTGTTGCACCCCCACAACCCGTCTGCGCACTACAACCGATAAAAACAGAGCTAGAGAACATTGCAGGCGAGATG
CAGATTCAAGAGAAGTGTTACCCCCAGTCCAACACACAACATCACGCTGCCACAAAATTAAAAGTGGCCCCGACGCAAAG
TGATCCGATCAATCTCAAGTTCGAACCGCCTCTGGGAGACAATTCTCCGCTACTGGCTGCACGTAGCAAGTCCAGCAGTG
GAGGCCACCTACCACTGCCAACGAATCCCAGTCCCGACTCCGCCATACATTCCGTCTACACGCACAGCTCCCCCTCGCAG
TCGCCTCTGACGTCGCGCCACGCCCCCTACACTCCGTCTCTGAGCCGCAACAACAGCGACGCCTCGCACAGTAGCTGCTA
CAGCTATAGCTCCGAATTCAGTCCCACACACTCGCCCATTCAAGCGCGTCATGCCCCACCCGCCGGCACGCTCTATGGCA
ACCACCATGGTATTTACCGCCAGATGAAGGTGGAAGCCTCATCCACTGTGCCGTCCAGTGGGCAGGAGGCGCAGAACCTG
AGTATGGACTCTGCCTCTAGCAATCTGGATACAGTGGGCTTAGGATCTTCGCACCCCGCATCTCCGGCGGGCATATCACG
TCAGCAGTTGATCAACTCGCCCTGCCCCATCTGCGGTGACAAGATCAGCGGATTTCATTACGGGATTTTCTCCTGCGAGT
CTTGCAAGGGCTTCTTCAAGCGCACCGTGCAAAATCGCAAGAACTACGTGTGCGTGCGTGGTGGACCATGTCAGGTCAGC
ATTTCCACGCGCAAGAAATGTCCAGCCTGCCGCTTCGAGAAGTGTCTGCAGAAGGGAATGAAACTAGAAGCGATTCGGGA
GGACCGAACCCGTGGCGGCCGCTCCACATACCAGTGCTCCTACACGCTGCCCAACTCAATGCTTAGTCCGCTGCTTAGTC
CTGATCAAGCGGCAGCAGCTGCCGCCGCAGCAGCAGTGGCAAGTCAGCAGCAGCCGCACCAGCGACTACATCAACTAAAT
GGATTTGGAGGTGTACCCATTCCCTGCTCTACTTCTCTTCCAGCCAGCCCTAGTTTGGCAGGAACTTCGGTCAAGTCGGA
AGAGATGGCGGAGACGGGCAAGCAAAGCCTCCGAACGGGAAGCGTACCACCACTACTGCAGGAAATCATGGATGTAGAGC
ATCTGTGGCAGTACACCGATGCAGAGCTGGCCCGCATCAACCAACCACTGTCCGCATTCGCCTCTGGCAGCTCTTCGTCG
TCGTCATCGTCAGGTACATCCTCAGGCGCCCATGCACAACTCACCAATCCACTACTGGCTAGTGCTGGTCTCTCGTCCAA
TGGCGAGAATGCCAATCCTGATCTTATCGCTCATCTCTGCAACGTGGCTGATCACCGTCTTTATAAAATCGTCAAATGGT
GCAAGAGCTTGCCGCTTTTTAAGAACATTTCGATCGATGACCAAATCTGCTTGCTCATTAACTCGTGGTGCGAGCTGTTG
CTCTTCTCCTGCTGTTTTAGATCAATTGATACTCCTGGAGAGATTAAAATGTCACAAGGCAGGAAGATAACCCTATCGCA
GGCCAAATCAAATGGCTTGCAGACTTGCATTGAACGGATGCTCAACCTAACAGATCACCTGAGGCGATTGCGCGTTGATC
GCTACGAATATGTTGCCATGAAAGTTATTGTGCTGTTGCAGTCAGATACGACAGAGTTACAGGAAGCGGTAAAGGTGCGC
GAGTGTCAGGAAAAAGCTTTGCAGAGCTTGCAAGCTTACACCCTGGCGCATTATCCTGACACGCCATCCAAGTTTGGGGA
GCTTTTGCTACGCATTCCTGATTTGCAGCGAACGTGCCAGCTTGGCAAGGAGATGTTGACGATCAAGACTCGCGATGGAG
CTGATTTCAATTTGCTAATGGAGCTTTTGCGCGGAGAGCATTGACAATTGATAACTAAGACGGAAATCTTTTACCATTGG
CAAAACAAGTTTCACATATTTAGTATTAGATATATATATTCTATAGATAAGATCCTTACTGTAAGTTCTGAAAACATGTG
CCTAAAAACCAAAGCCACGATAGCAGTCACATCAGGCCCACTGGTCGAGATTAAATCCAAGAGCAAGATTGCCAAATTTT
TACACCAATATATATTTTGATATGAGCCATGTGCAGGGCCTCAGATCGCTGTTGTTGTCGGCTAAAGTTTCAGTAAGAAA
AGTATATATTGATTTTGCTATTTATACATATTTGACTTATGTATAGTGTAAACTAAAGCACACATGGAAAATGAAAAGAC
TAAACAAATTT
        Other Products of this Gene
        Other Transcripts
        Name
        FlyBase ID
        Length (nt)
        Hr39-RB
        FBtr0081479
        4844
        Hr39-RC
        FBtr0081478
        2722
        Hr39-RD
        FBtr0081481
        4828
        Polypeptides
        Derived from THIS transcript
        Name
        FlyBase ID
        Length (aa)
        Hr39-PA
        FBpp0081009
        808
        Derived from OTHER transcripts
        Name
        FlyBase ID
        Length (aa)
        Hr39-PB
        FBpp0081008
        808
        Hr39-PC
        FBpp0081007
        701
        Hr39-PD
        FBpp0081010
        808
        Comments

        cDNA data suggests that four classes of Hr39 mRNA

        exist but only two were detected on northern blots.

        (Ayer et al., 1993)

        Transcript terminates at site supported by polyadenylated cDNA.

        External Crossreferences and Linkouts ( 1 )
        Crossreferences
        RefSeq - A comprehensive, integrated, non-redundant, well-annotated set of reference sequences including genomic, transcript, and protein.
        Synonyms and Secondary IDs (3)
        Reported As
        Symbol Synonym
        CG8676-RA
        (FlyBase, 1996-)
        Hr39-RA
        (FlyBase, 1996-)
        Hr39+R3.5
        (FlyBase, 1996-)
        Secondary FlyBase IDs
        • FBtr0000590
        • FBtr0000591
        References (4)