FB2026_01 , released March 12, 2026
FB2026_01 , released March 12, 2026
Transcript: Dmel\Syn-RF
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General Information
Symbol
Dmel\Syn-RF
Species
D. melanogaster
Annotation Symbol
CG3985-RF
FlyBase ID
FBtr0089475
Feature type
mRNA
Associated gene
Dmel\Syn
Evidence Rank
Length (nt)
5803
Evidence Score
Genomic Location
Genomic Maps
cDNA Clones Consistent with the Transcript ( 115 )
Sequence
Sequence Downloader
AGTGAAAATTTCATCACCGTCGTTGACAGTTCAGCCAAAATTCTCTAGCTCCACAAAATTCGCCCAGCCAAATCTCAAAA
TTATCTAAACTACATTTTTTGTTCACTTTTGATCATTAAAAGTCATCGCTTAACGTTCATCGGCCATTCGAGTGGAAATT
TGTGAGCTCGAGCAGGAATATTCAAGTGAATTTTTAGCTCTTTTCGATTAAAATAGCGACCGGATAGCCTGAGATTCGTC
GTAGTAACGAAGCGAACCCCTGCGAAAACGGAGGCCAACTGCTCGACTTAATTGTCGACCACTGTCAATATTAGCGCCAT
CGCAACTGCTGGGTGTGGGCGAATCTGCGCCCCGCCACCGGAGCCAAAAAGCAGCACCCTGAATTTCTCGTCGTTCAAAT
CGAGCTTCACTTCCAATGTTAATTTCCTGAAGAGAAGATTCAGCTCGGGAGACTTGTCTTCCGAGGTAGACGATGTCGAT
CCGAATAGCCTGCCGCCGGCGGCGCGGCCCATCCAAGATCAGCCGACGAAGCCGCCGGTTGCCGGCGGACCGCCGAATAT
GCCGCCACCGCCGGCTCCCGGCCAACCGGCCGGAGCTGCTCCGGAGCTGTCGTTGAGCTTTGGCGCCGGCAAAACCCCGG
CGACGGCCGCACCTGCTCCACCACGTGGTGTCAGTGCGCCGACCAGTCCGGCCAAGTCGCGCGAAAGCCTGCTGCAGCGG
GTGCAGAGCTTGACCGGCGCTGCCCGGGATCAGGGAGCCTCCATTTTGGGAGCTGCGGTTCAGAGCGCCACACAACGGGC
ACCGGCATTCAGCAAGGACAAGTACTTCACGCTGCTGGTTTTGGATGACCAGAACACGGACTGGTCCAAATACTTCCGGG
GCAGGCGCTTGCACGGCGACTTCGACATCCGAGTGGAGCAGGCCGAGTTTAGGGACATTACGGTGGTCTCCAGCGCGGAC
ACCGGACCAGTTGTCACCATGGCCGCCTATCGCAGTGGCACTCGGGTGGCACGTTCCTTCCGCCCGGACTTTGTGCTCAT
TCGTCAGCCGCCGCGCGACGGATCCAGTGACTATCGTTCCACGATCTTGGGTTTAAAGTACGGCGGAGTGCCCAGCATTA
ATTCGCTGCACTCTATCTATCAGTTCCAGGACAAGCCCTGGGTATTTTCGCACCTGCTGCAATTGCAGCGACGCCTCGGA
CGCGACGGCTTTCCACTGATCGAACAGACCTTCTTCCCCAATCCACGCGATTTGTTCCAATTCACCAAGTTCCCAAGCGT
GCTGAAGGCTGGACATTGCCATGGCGGAGTGGCCACCGCTCGCCTGGAGAACCAGAGCGCCCTGCAAGATGCCGCCGGAT
TGGTGAGCGGTGCTGGTAACGATTCCCATTGTTACTGCACCATCGAGCCCTATATCGATGCCAAGTTCAGCGTGCACATC
CAGAAGATTGGCAACAACTACAAGGCGTTTATGCGCAAATCCATCACCGGCAATTGGAAGACCAATCAGGGATCCGCCAT
GCTGGAGCAAATCACTTTAACCGAGAAGTACAAAAGCTGGGTGGATGAGATATCCGAGCTCTTTGGCGGCATGGAAGTAT
GTGGTCTCTCCGTGGTGGTGGCCAAAGATGGACGAGAGTATATCATAAGCGCCTGCGACAGCACATTCGCCCTCATCGGA
GACACCCAGGAAGAGGATCGCAGGCAGATCGCGGATCTGGTGTCCGGACGGATGCAGAACGTCTGCCGTCCCAGCATGGC
GCAGACGGGTCCGGGCAAGTTGCCCTCCCGCTCCTCGGTCTCTTCCCGAGCAGAGAGTCCCACGGACGAGGGCGTGGCTC
CAACACCACCACTCCCAGCTGGACCAAGACCCGCGCCCATGGGTGGACCACCACCGATACCGGAGCGTACCTCACCCGCC
GTGGGTTCCATTGGGCGGCTGAGCAGTCGCAGCAGCATTTCGGAGGTGCCGGAGGAACCCTCCTCGTCGGGACCCAGCAC
AGTGGGTGGGGTGCGTCGTGATTCGCAGACTTCCCAGTCGTCGACCATTTCTTCGTCGGTGTCGCGAGCGGGCCAGAGGC
CACCGCAGACTCAGAACTCCGTGGTGGAGGATGCCGAGGACACCATGAAGAACCTGAGGAAGACCTTTGCGGGGATCTTT
GGTGACATGTAGGAAATCGCTAATAAGAAGCGCGGCAGAACGGCCAGCGAGACGAGCAGCGGCAGCGGGCCAGGAAGTGT
GCCTAGCAGCGCGGGTCCGGGGAGCGGATTCAGTAGCTCCTTCCTCGGCAAGCAGTTCTCGTTCGCCGGCAAGGGGGAGG
GCGTGATCTCCACGCAGCCCACACAGCGTCCCAGCGAGGAGCCCCCAGCCATTCCGACGACGGCCAGCTCAGCCGTCCGG
CCGGAGAGCAGCGTTTCAGTTAGCGATTCAAGAAATACGGATACACTTACGGAAAGAGCGGGTGCCGGCTACCAGCCGGT
CACCAATTACGAGCAACAGGAGAGGGTCAATCCCTTTGATAAGGAGCCCAGCAAGTCGGGCAGCGCGGCCAGCATACACA
CCTCGTCGTCCTCATCGATTTCATCGTCATCCATCTCGTCGCGCATCAATCGCAATGGCAATGCCATCCAATCCCCGCCC
CCACCGGCGGGTCCACCACCACCGCCGCCCACCAATGTCACGGCGGTGGGCAGCAATGCCAATAGCTCCAGTGGCTACAG
GAACAGCTTTAGCAGCTCCCTTAGCAAGGACAAGACGAGCTATGGCAATTATGGCAGCACCACTTCGGTGGAGACCATCA
CACGAATGGATACGAACACCACAAACATAGGAGCCACTGCAACGGAAGCTGGAGAAGCTAGTGGTGTAACGGCCATAACC
AATATCAGCAATAGTGACGGAATAGTGGCTCCAACCACGGGAACCATCACCACCTCGGTGACCACCAACGACTGGAGATC
GGCCATTGGTATGCGATCGGCCAGTGTGTATAGTGCACCCGCTGCAGTAACCACTGTGTTGCCAGGAGACACATCCGGCT
ACGATTCCAACTCGATTGCCTCGCAGGGCGAGGGTCTGAACAATCCAAGCGATCTGCCCTCGTACACCAGACCATCGTAC
TCACGATCAGAGAGCAATGCCTCCAAGCACTCGGATCTGGATGTAATTTTCGGAGACAGCAAGACCACCCCGGCATCCTA
TGGAAATGGCAAATACACCCGGGCCGCAGGATCTATTTCGGATGCCGATATGATTTTCGGAGGGCCACCATCGAACTACA
AAACCGATCGCTTCGGGGCCTCCAAAAGCATGAGCATGACCTCCGGCGGAGTGGGTTCCGGAAATGGATCCGGATCCGGA
TTGGGGGGATATAAGATCTATGATAGCATTCAGAATGCGGCATTCAGCGACTTCAGTGACTCGGGCAGTATGAGCAGCAT
TGGATCGCATACCAAACGCTGGAGTGCCAGCAAGGAGGAGGATGATGAACTGGACTTAAAGTAAATCCAAGGGAAATTCA
AAAGTAGAACTATCAGAACTACAGAAAACATTCACACACACACTAGAGCAACCAAACTATTGAATTCTATCTACTTTCTG
CCTCTGAAGTTTCCTGGTTTCATGGGAAAAACACTAAGCATATACTCACTCACACAACACATAACTATTGGGTTACTATC
GTTTCCACTGTCAACTATCATGATCGAAACACTTTCCATCTTTCATCTGCCATAAAAGCATCAATGAAGAAATTAGCATA
ATATGCTATTTAGACACTGTAGTACACTACTAAAACATAAATATAACCACCAATGCAACAACAATAATGCAATGCCCATA
AGATATGTGCAATGAAATGTCGCCGATTGACTTGACTGGTTTTGCAGTGCGATAAGAACGAGGAACCTATTTAATTACCA
TACTTATAAACATTTTGAAACATTTTCCAAAGCAACAAATTATATATTAAATATATTATTGAGAAAAATATTGAATTATA
TACCGACATATTAAACCAATTGAGAGTTGACGACATTAAAAGTAATCGCAAGCATATATTACGTGTTAACCTGCTAATAA
ATCAATGGGAAAACTTTTAAATAAATCGAATATTAATAAATCTGTTATATACCAACATGAGACACATATGAAATCCTAAA
AACTATAAAAACTAAAAAATAAAAGACAATATGCGCAACGTATAACAAACAACCAAGCGTTTAATACTAATACATACGCG
ATCTAATTATAATGGATAAATTAGTTAACGAACTACATGTATTCGGAAATTACTATGAGCAAATGTTACATAAAGAACAC
AAAGACACACGAGAGTGGAAGCAACTCACACACAAAGTAAATGTTTATTACCACAAATATTATGATTATTATTATGATGT
ATTAGCAGTTAATGTTTACAAACTCGAAAGGCCCGGATCGAGGGCCTCGAAGATATGGAAAGATAGAAAGTACCAAGCAG
GACGACAAGCAATGTTAATCTAGTCTGAACCAACTGGACAACAATAACAAACCAAAAATATATTCGAAAATGTAGCGATC
CCATGCGATCAACATAAATTTACACGGCTTAGTCGGTACACGATCGAAGGTCGAGAAATGAAGTGAAATGAAAATAGAGG
CAATGGTATCGACGAATATTTAGATAATATACACAACAAAATATATATAAATGTTGCAAGCGACAACAACGAAGTCATAT
TATGCGTTCAAGATATAAACAATAGCTTCAATTGTTTAGGACTTTGATTTAGCGACAAATGTTTAGTATTTTGGTGTTTT
TTGTTACGCACATGTTTAAGCATTATTTAGAGCAATAGACAATTTTACATATGTTGAATTTAAAATAATAGTTGAAGTCG
TTTCAATTGGGTTGTATACTTCTCTCTTTTATCAACTACAACTTAATGCATTAGAGAATTCTAAATATCGTTATATGCTG
AGGAATATAGCGCAAGTATACTTGAGAACTTGTTAGTTTACCAACTCTCTTCGATTTTAGTAGAATCTGCATTTGGAAAT
GCTACCAATATTTTAATCTAAACAAATTTACAACTATACAAGAATATTGAATAACAATTGTTTTTGGTTCAGGGCCAAAA
CCCGGTTATTTCATGCTATATCATCCTACCATTTATATACAAGTAAATATATTAAAATATGTATGTAATCTTAAGTAAAT
CTTTGGCTACAAGTACTTTTTCGTAATCGTATACATCATCATTTTAATCAAACTGGCACATATTCACGGAATGTTTTATA
AACATATATTTATTACGACAAATGTAGAACAGAAAGTACATAAATAAATACGGGCATCACTCGAGGAATTCGAAAATCAT
ATATCATGGCACTAGACCCACAACTCACTCACCCCATAACAATATCGTGCATCAAATGATCAGAAAGTGCTGAAATACAT
AAATTGAAACTCAAAGGAAATACTCAAGGCATAAGGCATATAAAACTTACACACGACTTCTAATCTGTTGCAAAATATAC
CAAATAAATACTCGTATTATTGTGAAAGTATAGCAAGAAATATGTACTTATATGTTGTCTGTAATTTATTCAACTCCCCC
TTGAAGTCTCACTTCCCCAAATTCAGAAAGTATAAAGAGTCTGGGCTACACCCACTCAAATTTACTGCAAATCTCTCTAT
ATATATATATATATATATATGTACTACGAATTATTCCAATGAACAGCGGCAACTGCAATGGCTAAGAAAAACAAAAAGCA
AAACCAAAGTAACAATAAATGAGTTGATGATTGATACAAAAGT
Other Products of this Gene
Other Transcripts
Name
FlyBase ID
Length (nt)
Syn-RA
FBtr0089477
4206
Syn-RD
FBtr0100471
5803
Syn-RE
FBtr0100472
5803
Polypeptides
Derived from THIS transcript
Name
FlyBase ID
Length (aa)
Syn-PF
FBpp0088481
981
Derived from OTHER transcripts
Name
FlyBase ID
Length (aa)
Syn-PA
FBpp0088969
537
Syn-PD
FBpp0099901
1041
Syn-PE
FBpp0099902
597
Comments

Stop-codon suppression (UAG) postulated; FBrf0087510; reflected in aa sequence of predicted polypeptide.

Transcript terminates at site supported by polyadenylated cDNA.

Transposon inserted in intron

GC splice donor site postulated

Corresponds to SYN1-RT, as described in X95453.

translation_exception: stop_codon_readthrough

External Crossreferences and Linkouts ( 1 )
Crossreferences
RefSeq - A comprehensive, integrated, non-redundant, well-annotated set of reference sequences including genomic, transcript, and protein.
Synonyms and Secondary IDs (3)
Reported As
Symbol Synonym
CG3985-RF
(FlyBase, 1996-)
Syn-RD
Syn-RF
(FlyBase, 1996-)
Secondary FlyBase IDs
    References (2)