FB2026_01 , released March 12, 2026
FB2026_01 , released March 12, 2026
Transcript: Dmel\hts-RI
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General Information
Symbol
Dmel\hts-RI
Species
D. melanogaster
Annotation Symbol
CG43443-RI
FlyBase ID
FBtr0309106
Feature type
mRNA
Associated gene
Dmel\hts
Evidence Rank
Length (nt)
2643
Evidence Score
Genomic Location
Genomic Maps
cDNA Clones Consistent with the Transcript ( 36 )
cDNA Clones, Fully Sequenced
Exact Match
    Contained within the annotated transcript, internally consistent
      End(s) extend beyond the annotated transcript, internally consistent
      cDNA Clones, End Sequence Only (ESTs)
      Contained within the annotated transcript, internally consistent
      End(s) extend beyond the annotated transcript, internally consistent
      Sequence
      Sequence Downloader
      CTAACAAAATCGTAGTACGAAATATCGAAAACGAAACACATCACGCGGGCGAAATTTCGTGAAGTTCAGCATTTACAAAT
TTCTCCCTCTGTGGCGTATGTGTGTTTGTACGAATTAGCGGCTGAAAACCAAAAACCGAGGTGCGAGAGCGAGAATACAT
TTATAAAAAACGCGTGCGTTTCTCCTCTAACACATACAGTGAGTGTGACCGTTGTATTTGTGACCTGTGCCTGTGTTAGC
GGCCACTGGAGGATCAACGAATTTAAAAGAATACTAAAAGTACCGGGACATCAATATAAAAGTATTATAACCACGCAACA
AATTCAATTTTAAGCATTTTAACTGAAATCATGACTGAAGTTGAGCAACCGCCACAGAATGGCATAGATCCCACTGCCGG
CGAAGATGATGACAATAGCAAAGCACGTCCCGCGGATATTGAACAGGATATGCGCGAAATGGAGCGTCGCAAGCGAGTCG
AGGCTATAATGGGCTCGAAACTGTTCCGCGAGGAGCTGGAGCGTATCGTGGACTCGGCGCGCGATGGAGGTGCTGGCGCT
AGTGGAATCCTGCAGCAGCTGTCGGACATTGTGGGCGTACCAGTGTCCAGGGTGGGCAGCGTCTTCAAGAGCAGCAACTG
CATGGTGCCAATCAACGATATACGCGGCGTCGAGTCCATGGGCTATGCCAAGGGCGAGAAGATACTCCGGTGCAAGCTGG
CCGCCACATTCCGTCTGCTCGATCTGTACGGCTGGACCCAGGGTCTGGGGGCACAGATCACCGCCCGACTCAAGGTCGAT
CAGGAGTACTTCCTGGTTAACCCATACGGCCTGCTTTACCACGAGATCACTGCCTCAGCGCTGAACAAGGTGGATATGCA
AGGACAGATTGTGGAGCAGGGCACCACCAACTTTGGCGGCAACAAGAGTCACTTTGTCCTCCATTCGGTGGTACATGCTG
CCCGTCCAGATATTCGATGCGCCATCTATATCGGCTGCAGTCCAGTCGTGGCTATTTCCTCACTAAAGACGGGTCTATTG
CCCTTGACCAAGGATGCCTGTGTGCTGGGCGAGATCACCACTCACGCTTATACTGGTCTATTCGACGAGGAGGAGCGCAA
TCGATTGGTCCGCAGCCTTGGTCCCAACTCCAAGGTGATTCTGTTAACTAATCACGGTGCTTTGTGCTGCGGAGAGACCA
TCGAGGAAGCCTTCTTCGCCGCCTGTCACATTGTACAGGCGTGTGAGACGCAACTGAAGCTGTTGCCCGTCGGTTTGGAT
AACTTGGTGCTGATTCCAGAGGAGTCGCGCAAGGCCATTTACGAGCAGTCGCGCCGGCCGCCGGAGGATCTGGAGAAGAA
GTTTGCCGCCGTCGCCGCTGCCGAAGATGGTGCTGCTACTGCTGAAAAGGATGCAGCCGAAGCAGTACCCAAGGTTGGCA
GTCCGCCCAAGTGGCGTGTGGGTGGTGCTGAATTTGAGGCCTTGATGCGCATGCTGGACAATGCTGGCTATCGCACTGGC
TATATCTACCGTCATCCACTGATCAAATCGGATCCTCCCAAGCCTAAGAACGATGTCGAACTACCGCCAGCTGTTTCATC
ACTGGGCTATCTTCTTGAGGAGGAGGAACTCTTCCGTCAAGGGATCTGGAAGAAGGGAGATATTCGCAAAGGCGGCGATC
GCAGTCGGTGGCTCAACTCGCCAAACGTTTACCAAAAGGTCGAGGTTCTGGAGACCGGCACTCCGGATCCCAAGAAGATT
ACAAAGTGGGTGGCTGAGGGTTCCCCCACCCACTCAACGCCAGTGAGGATAGAAGATCCACTCCAGTTTGTGCCTGCAGG
AACCAATCCAAGGGAATTTAAGCGTGTCCAGCAACTAATTAAGGACAACCGCCGGGCAGATAAGATTTCAGCCGGACCAC
AGTCGCATATTCTGGAGGGCGTGACATGGGACGAGGCGAGCCGACTCAAGGATGCAACGGTCTCGCAGGCCGGCGATCAT
GTCGTCATGATGGGTGCCGCCTCCAAGGGAATCATTCAGCGTGGCTTCCAGCACAATGCCACTGTCTACAAGGCACCGTA
TGCTAAGAACCCATTCGATAACGTCACAGACGATGAACTCAATGAATACAAACGCACGGTGGAGCGCAAAAAGAAATCGG
TGCATGGTGAATATACCGACACAGACTTTTCGGAATCCGAAGCGGTCCTGCAGGCGGGGACAAAGAAATACCCACAAAGC
GAACCCGAGACCGAGCACCAGGTCATTGAGATCCAAACACAGCAAGCGCCAGTGCCAAGGCAGGCGGAAGTCGTGCTGAG
CGATGGTGAAAACGTACAAAATGGCGATCATTCGGAGGCACACTTGAGCACCTTCTCGCAGAGCAGTAAAGAGTTCCAGG
ATGTCTCCACGGACGGATCCCCCAAGAAAGACAAGAAGAAGAAGAAGGGTCTGCGCACACCATCGTTTTTGAAAAAGAAG
AAGGAGAAGAAGAAGGCCGAGGCCTAAGCTGACCATCAGCGTGATCCGTAGGAGTAGCAATCTTGACCAACCTCCCACCA
TCAGCGGGAACCGAGAAAAATAACGACAATGATACCACGAGAAAATGGAAACTTTAGCCAGATCAGCAAAAGAAGCATTA
TAT
      Other Products of this Gene
      Other Transcripts
      Name
      FlyBase ID
      Length (nt)
      hts-RA
      FBtr0309104
      4163
      hts-RC
      FBtr0309103
      2531
      hts-RD
      FBtr0309102
      2582
      hts-RH
      FBtr0309105
      2287
      hts-RJ
      FBtr0309107
      1945
      hts-RK
      FBtr0309108
      4153
      hts-RL
      FBtr0309109
      3854
      hts-RM
      FBtr0309110
      4100
      hts-RN
      FBtr0309111
      4399
      hts-RO
      FBtr0309112
      4161
      hts-RP
      FBtr0309113
      6053
      hts-RQ
      FBtr0309114
      3723
      hts-RR
      FBtr0309115
      3977
      hts-RS
      FBtr0340491
      3963
      hts-RT
      FBtr0475305
      2745
      Polypeptides
      Derived from THIS transcript
      Name
      FlyBase ID
      Length (aa)
      hts-PI
      FBpp0301114
      718
      Derived from OTHER transcripts
      Name
      FlyBase ID
      Length (aa)
      hts-PA
      FBpp0301112
      1156
      hts-PC
      FBpp0301111
      495
      hts-PD
      FBpp0301110
      668
      hts-PH
      FBpp0301113
      495
      hts-PJ
      FBpp0301115
      495
      hts-PK
      FBpp0301116
      1156
      hts-PL
      FBpp0301117
      718
      hts-PM
      FBpp0301118
      718
      hts-PN
      FBpp0301119
      1156
      hts-PO
      FBpp0301120
      716
      hts-PP
      FBpp0301121
      1833
      hts-PQ
      FBpp0301122
      739
      hts-PR
      FBpp0301123
      739
      hts-PS
      FBpp0309427
      716
      hts-PT
      FBpp0423414
      675
      Comments

      Isoform R1 in FBrf0111518.

      Unconventional splice site postulated (GT-GG). The splice acceptor site is supported by GB:AF151705 and GB:AY122245. The sequence (GG) at the splice aceptor site is conserved in all 12 sequenced Drosophila species except pseudoobscura and persimilis, which have an AG.

      Transcript terminates at site supported by polyadenylated cDNA.

      transcript_exception: non_canonical_splice_site

      External Crossreferences and Linkouts ( 1 )
      Crossreferences
      RefSeq - A comprehensive, integrated, non-redundant, well-annotated set of reference sequences including genomic, transcript, and protein.
      Synonyms and Secondary IDs (2)
      Reported As
      Symbol Synonym
      CG43443-RI
      hts-RI
      Secondary FlyBase IDs
        References (0)