FB2026_01 , released March 12, 2026
FB2026_01 , released March 12, 2026
Transcript: Dmel\Pkc53E-RF
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General Information
Symbol
Dmel\Pkc53E-RF
Species
D. melanogaster
Annotation Symbol
CG6622-RF
FlyBase ID
FBtr0331960
Feature type
mRNA
Associated gene
Dmel\Pkc53E
Evidence Rank
Length (nt)
4711
Evidence Score
Genomic Location
Genomic Maps
cDNA Clones Consistent with the Transcript ( 7 )
cDNA Clones, Fully Sequenced
Exact Match
    Contained within the annotated transcript, internally consistent
      End(s) extend beyond the annotated transcript, internally consistent
        cDNA Clones, End Sequence Only (ESTs)
        Contained within the annotated transcript, internally consistent
        End(s) extend beyond the annotated transcript, internally consistent
          Sequence
          Sequence Downloader
          AGAACGTGTTTGTGTCTCGAGCGAAGCGCACGTGCCGGGAAAGCGATACAAATTCGCAGTGCCAGGAGGCCGAAGTGAAA
AGCTGGGGATAAACTGCCCCTACATTTTCCAGCAATAACAACAACAACAGATGTGTATGGCATTTAATGTCTAATAAAAA
CACGCCGACAACAAAAACTGAAAATCAATAAACACAAAGCCAGCAAAAAGTACGTAACCAGCAACAACAACACCAACAAC
AACACCCAAATGCGGCAACAACAAGTGAGCAAGTTAAAGAACCTTTGCGATTTGTAAACGCTGCGAAATACCCGTTGTGC
AGAAAAAAAAAACACCAACAAATAAACAAAAAAGCAACAAGAAGAAAAAAAAAGCAAAAAAAAGAACATTTAGCAACAAT
GTCGGAGGGCAGCGATAACAACGGGGATCCCCAGCAGCAGGGGGCGGAGGGGGAGGCGGTGGGCGAGAACAAAATGAAGT
CCCGCCTCCGCAAAGGAGCCCTCAAGAAGAAGAACGTCTTCAATGTCAAGGATCACTGCTTCATCGCCCGGTTCTTCAAG
CAGCCCACGTTCTGCTCCCACTGCAAGGACTTTATCTGGGGCTTCGGAAAGCAAGGATTTCAGTGCCAAGTTTGCTCCTA
TGTGGTGCACAAGCGGTGCCACGAATATGTCACCTTCATCTGCCCGGGCAAGGATAAGGGCATCGATTCGGACTCACCAA
AAACTCAACACAATTTCGAGCCATTCACATACGCAGGACCCACGTTCTGCGATCATTGTGGGTCCCTGCTGTATGGCATT
TACCACCAGGGTCTCAAATGCTCAGCATGTGACATGAACGTGCATGCCCGCTGCAAGGAGAACGTGCCCAGCCTTTGCGG
ATGCGATCACACGGAGCGGCGGGGTCGCATTTATCTGGAGATCAATGTCAAGGAGAATCTGCTAACTGTCCAGATCAAGG
AGGGTCGCAATCTCATACCCATGGACCCAAACGGACTGAGCGATCCCTATGTGAAGGTGAAGCTAATTCCAGATGACAAG
GATCAATCCAAGAAGAAGACTCGCACCATTAAGGCTTGCCTAAATCCTGTCTGGAATGAGACACTCACTTATGATCTAAA
GCCCGAAGACAAGGATCGACGCATCCTGATCGAAGTGTGGGACTGGGATCGCACTTCACGCAATGACTTTATGGGTGCTT
TGTCCTTCGGAATCTCAGAGATCATCAAGAACCCAACCAATGGCTGGTTCAAACTGCTCACCCAGGACGAAGGCGAGTAC
TACAATGTGCCATGTGCGGATGATGAGCAGGACCTACTGAAGCTCAAGCAGAAACCATCGCAAAAGAAGCCGATGGTAAT
GCGCAGCGATACGAACACGCATACTTCTTCCAAAAAGGATATGATCCGGGCCACGGACTTTAATTTCATCAAAGTTCTCG
GCAAGGGCTCATTTGGAAAGGTTTTGCTGGCTGAGCGCAAAGGCAGCGAGGAGTTGTATGCCATTAAGATACTCAAAAAG
GATGTGATCATTCAGGACGACGACGTCGAGTGCACCATGATCGAAAAGCGTGTCCTGGCGCTGGGCGAAAAGCCACCTTT
CCTGGTCCAATTACACTCCTGCTTTCAGACGATGGACCGTTTGTTCTTTGTAATGGAGTATGTGAATGGCGGCGATTTGA
TGTTCCAAATCCAACAGTTTGGCAAGTTTAAGGAACCAGTGGCCGTATTTTATGCCGCTGAAATAGCAGCAGGTCTTTTC
TTCCTTCATACCAAGGGCATACTGTATCGAGATCTAAAGCTGGATAATGTGCTCCTAGACGCCGATGGACATGTGAAGAT
TGCGGACTTTGGCATGTGCAAGGAGAACATAGTGGGTGATAAGACCACAAAGACTTTCTGCGGTACACCTGATTACATTG
CTCCAGAGATAATACTGTATCAGCCCTATGGCAAATCGGTGGACTGGTGGGCCTATGGAGTACTGCTTTATGAGATGTTA
GTGGGCCAGCCACCTTTCGATGGCGAAGATGAGGAGGAGCTGTTTGCCGCCATAACTGATCATAATGTGTCCTATCCAAA
GAGCCTGAGCAAAGAGGCCAAAGAGGCCTGCAAGGGCTTCCTAACTAAGCAGCCAAATAAGCGTTTGGGTTGTGGTTCCT
CTGGCGAGGAGGATGTGCGTCTGCATCCCTTTTTCAGACGCATCGATTGGGAGAAAATCGAAAATCGCGAAGTGCAACCG
CCATTTAAGCCGAAAATTAAACACCGCAAGGATGTGTCCAACTTTGACAAGCAGTTCACATCAGAGAAAACAGACTTGAC
GCCCACGGACAAGGTGTTTATGATGAATCTGGATCAGTCGGAATTCGTTGGCTTCTCCTACATGAATCCCGAATATGTTT
TCAGCCCATAGATCCGATCTGATCCGATCTAATTTCCATTCTTCGCGTTGTGTCCCCTAAGTCTATTTTGATATTGATTA
CTAAAAAGACATCTTGTTAATCTTTGTTAAGTTTTCTGTTTGATTTTCAACCATTATATGTATCTATATTTATTGAATTG
TTAAGTTTTTAGTTAATTTTAAGATCTAGAAACTGTGAAACAGAGCTTTAGTTATGGAATATTCGAATACTGTTCAAAGG
CACGTCCTTACCTCAAGCCAACAAAAAAAGCAATAAAAGCAACATGTCAAATACTTGGTAGCCTATCTATCACTCTGCAT
AGAACTTTGATCAGTTCTGTAAGATTTTCATAATAAGTATTTCAACGAGCTTTTAGCATGTGAATTTTCCATTTAGCCAA
CATCTAAGTGTTTTTTGTAGCCAATTAATCGATTTTAATAGTAAATACCATGGAAAGGTCCCATCCATTTCTCGATGTAG
CCAGGAAATGAGAGACTTAGCAGTTTTGGGCCAGATTCAAACGTCATTCGATTGTAGTGCTAGCCCCGGCATTATGATCA
AATCGAAAACGCGTTTAGGTGAGTTCGCCAAAGAGGGAAAAATCGAGGAGGAGAACATTCAACATTCCCAAGATATTCCC
AAGATATTAAAATAGAAAATTCAGTTCATTTTAATTCCATTAATATATCAATGTGCGTGTAAATTAATTTTACATTTTAT
TTAAAAAAGAAAAAATTGCAAACACACGTATATATAGCTTGTCTATATATATGGCTGGCATAGAGTCTCAATGTACCATA
ACTAACAAATTGCATAGCAATAAGTTAAGCTTAGATGATACTTAACACTAAAGCTGTAAAACCTAAACTAAAAACTAAAA
CTGTTTGCTCCTAGTCAAGGGAAAACTATGTTAGATTGCTCTTGAGTCGGAAACTTTAGTACCTTCGCAGGAATCTAGCA
ACTAGCAACTACTGTTTAACTATGGGAAAAGACAATCTACTATAAGCATGTAAAACTATATATATATAGTCATCGTATAT
AGCCTAGACCGATTTCCAAATTAGCGCCAGCCGAGCTAAGCTTTTGTGCCTCTCGTAGCTATCTTTCTCTCATAGAAGAA
ACCTAAAATGAATTCATGCCAAACGAGGCTATGCGTATTACGTAACTATAGGGAAATTATAAAATTATATGTGTCTGTCG
ATGGGGAATTTGTAGCCAAGCTAAATGCGTAGGGCACAACAGAGTAACTTAAATGAGAATTAACATATAACCAGAATCGG
TAAAGCTTAACAGTAGTTTAAACTAGTGAATTCGAGACGTAAAATGAATAAATATTTATTAACTTAAATATATTGAATTG
TGTAACTCCGAACTTGAAGCATTTAAAACGTTTAATTTAACTATCCAATTTGAAATCAAAATGTAATCTAAGCCAACAAG
GTAGATCAAATGATATACTCGAATCCAAATCACGATGGATGAGTATGATTCACAACCACGATGAGTAGCACTTAACGTTC
AACGCGGGGATAAATCAATTTGCTCGTATTTTAAAAAGTAAATGTAATGCATAATTAGCATATATCTATAGATGTATATG
TGTGTCTGAATTACTTTAATGACTTTCATGGCAAATAAATGAAGGAAGCGAAAACACTTTTCAAGTCTGTTCAAATATTG
AAAATATTACAATTTAATGAAAATTAATTTTTAATTATCGAACTATATACATATTGAAAAAGCATATTGGTAGGACTTTA
ACTGCATACAGTTTTATTTAGAGTCAACATTTTTACAAAACATATTTATGTAATTTTGATCATTTTCACGGTCGTTTTTT
AAACCTAAGTCTCATACGTATGTATTTGAATTGCATATTAACTTAGTACAAACTAAATAGATATATAAACATATACATTA
ACATGATTATATCTATGAAATATCGATGTGAATTACTTAAAAGATATAATAAGATGTCACGCGAGAGAAAGAGAGAGCGA
AAACTTCCAAACAAAACTCTCGACCGAAATCCGAACTAAACTAATGAATACTATTTTTACGTCTGAATAATTCACCCACC
CAAAACCCGAACAGTCAGTCCGTGCTATATGCCTGTGCATATGTGCATTCACTATATACATTTACGAGTACACACAGTAC
CAGGCTGGATATAATCTATAATTTATTGAGCCAAGCCAAACAAAGAGACAAACTCAAATAAATCAAACAAACGGCTTTGG
GCACACCACACACATACAGTACGAGTACCCGAAAGTAAATAAAAGTACTATTAAATGCATCTGAATCTCGT
          Other Products of this Gene
          Other Transcripts
          Name
          FlyBase ID
          Length (nt)
          Pkc53E-RA
          FBtr0087049
          3175
          Pkc53E-RB
          FBtr0087048
          2696
          Pkc53E-RC
          FBtr0112819
          2693
          Pkc53E-RD
          FBtr0305069
          2024
          Pkc53E-RE
          FBtr0305070
          2633
          Polypeptides
          Derived from THIS transcript
          Name
          FlyBase ID
          Length (aa)
          Pkc53E-PF
          FBpp0304291
          670
          Derived from OTHER transcripts
          Name
          FlyBase ID
          Length (aa)
          Pkc53E-PA
          FBpp0086198
          670
          Pkc53E-PB
          FBpp0086197
          679
          Pkc53E-PC
          FBpp0111731
          678
          Pkc53E-PD
          FBpp0293606
          525
          Pkc53E-PE
          FBpp0293607
          678
          Comments

          Transcriptional initiation site supported by short-capped RNA data (FBrf0209722).

          Extended 3' UTR based on RNA-Seq data.

          External Crossreferences and Linkouts ( 1 )
          Crossreferences
          RefSeq - A comprehensive, integrated, non-redundant, well-annotated set of reference sequences including genomic, transcript, and protein.
          Synonyms and Secondary IDs (1)
          Reported As
          Symbol Synonym
          Pkc53E-RF
          Secondary FlyBase IDs
            References (0)