FB2026_03 , released September 17, 2026
FB2026_03 , released September 17, 2026
CV Term Report
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General Information
Term stop_lost ID (Ontology) SO:0001578 (Sequence Ontology)
Definition A sequence variant where at least one base of the terminator codon (stop) is changed, resulting in an elongated transcript.
Also Known As "ANNOVAR:stoploss" ; "Jannovar:stop_lost" ; "Seattleseq:stop-lost" (for all, see Synonyms field below)
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SO.org
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 stop_lost (all annotations which use CV term, excluding "NOT" statements)
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coding_sequence_variant
 |__terminator_codon_variant__
inframe_variant               |
 |__nonsynonymous_variant_____|
feature_variant               |
 |__feature_elongation________|
                              stop_lost  3 rec.
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Is a terminator_codon_variant
feature_elongation
nonsynonymous_variant
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Synonyms
  • "ANNOVAR:stoploss" EXACT VAR
    "Jannovar:stop_lost" EXACT VAR
    "Seattleseq:stop-lost" EXACT VAR
    "Seattleseq:stop-lost-near-splice" RELATED VAR
    "snpEff:STOP_LOST" EXACT VAR
    "stop codon lost" EXACT
    "stop lost" EXACT ebi_variants
    "VAAST:stop_lost" EXACT VAR
    "VAT:removedStop" EXACT VAR
    "VEP:stop_lost" EXACT VAR
Secondary IDs
hide External Crossreferences & Linkouts
http://snp.gs.washington.edu/SeattleSeqAnnotation137/HelpHowToUse.jsp "Seattleseq"
http://snpeff.sourceforge.net/SnpEff_manual.html
http://vat.gersteinlab.org/formats.php "VAT"
http:www.ensembl.org/info/genome/variation/predicted_data.html#consequences