FB2026_01 , released March 12, 2026
FB2026_01 , released March 12, 2026
Allele: Dmel\shfSEED-sfGFP
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General Information
Symbol
Dmel\shfSEED-sfGFP
Species
D. melanogaster
Name
FlyBase ID
FBal0406283
Feature type
allele
Associated gene
Associated Insertion(s)
Carried in Construct
Key Links
Allele class
Nature of the Allele
Allele class
Progenitor genotype
Associated Insertion(s)
Cytology
Description

A 'SEED-sfGFP' ('scarless editing by element deletion') cassette has been inserted into the endogenous shf locus. The SEED-sfGFP cassette contains a Disc\RFPDsRed(T1).3xP3.cHa marker flanked on the 5' side by 3 copies of the target site for the 'gRNA#1' guide RNA (sequence of this guide RNA is GTAGTACGATCATAACAACG) and on the 3' side by 3 copies of the target site for the 'gRNA#2' guide RNA (sequence of this guide RNA is GTACATCCATACAGTACCAG), and with the 5' and 3' parts of the split sfGFP sequence sharing a repeated sequence of ~400bp. In addition, a stop codon has been introduced immediately before the target sites for 'gRNA#1', so that the cassette insertion is predicted to generate a truncated protein that preserves only the first 60 amino acids of shf. If double-strand breaks are induced at both guide RNA target sites (by providing Cas9 and both of the 'gRNA#1' and 'gRNA#2' guide RNAs), single-strand annealing (SSA) repair can seamlessly remove the SEED cassette (including the Disc\RFPDsRed(T1).3xP3.cHa marker) and reconstitute a functional sfGFP tag sequence.

Mutations Mapped to the Genome
Curation Data
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Location
Additional Notes
References
Variant Molecular Consequences
Associated Sequence Data
DNA sequence
Protein sequence
 
Expression Data
Reporter Expression
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Marker for
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Reporter construct used in assay
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Disease-implicated variant(s)
 
Phenotypic Data
Phenotypic Class
Phenotype Manifest In
Detailed Description
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External Data
Interactions
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Xenogenetic Interactions
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Complementation and Rescue Data
Comments
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Mutant
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Stocks (0)
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External Crossreferences and Linkouts ( 0 )
Synonyms and Secondary IDs (2)
Reported As
Symbol Synonym
shfSEED-sfGFP
shfsfGFP-SEED
Name Synonyms
Secondary FlyBase IDs
    References (1)