FB2026_01 , released March 12, 2026
FB2026_01 , released March 12, 2026
Human Disease Model Report: neurodegenerative disease, arcRNA-related
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General Information
Name
neurodegenerative disease, arcRNA-related
FlyBase ID
FBhh0000982
Disease Ontology Term
Parent Disease
OMIM
Overview

Associated with nuclear RNP bodies called omega speckles, the long non-coding RNAs encoded by Dmel\lncRNA:Hsrω are described as arcRNAs (architectural RNA). arcRNAs are thought to function as an essential scaffold or platform of nuclear bodies. RNAi targeting constructs, alleles caused by insertional mutagenesis, and loss-of-function mutations caused by imprecise excision of TE insertions have been generated for lncRNA:Hsrω.

The role of this lncRNA in neural development has been investigated using neuron-specific RNAi targeted to lncRNA:Hsrω. Sufficient knockdown of lncRNA:Hsrω requires multiple copies of both a pan-neuronal driver and an RNAi construct; it results in progressive impairment of locomotion, neuroanatomy defects at larval neuromuscular junctions, and shortened lifespan. The observed phenotypes are similar to those observed in established fly models of neurodegenerative disease, including fly models of amyotrophic lateral sclerosis. Mutations of lncRNA:Hsrω have been investigated in the context of several Drosophila models for diseases caused by expanded CAG (polyQ) repeats (assayed for exacerbation or amelioration of the disease phenotype); see below and in the lncRNA:Hsrω gene report.

Many genetic and physical interactions have been reported for lncRNA:Hsrω, including with Dmel\caz, which is orthologous to the human gene implicated in amyotrophic lateral sclerosis 6 (see FBhh0000018), and with Dmel\TBPH, which is orthologous to the human gene implicated in amyotrophic lateral sclerosis 10 (see FBhh0000017). See below and in the lncRNA:Hsrω gene report.

[updated Mar. 2019 by FlyBase; FBrf0222196]

Disease Summary Information
Disease Summary: neurodegenerative disease, arcRNA-related
OMIM report
Human gene(s) implicated
Symptoms and phenotype
Genetics
Cellular phenotype and pathology
Molecular information

A subset of lncRNAs are found in nuclear bodies, which are the sites of the biogenesis, maturation, storage, and sequestration of specific RNAs, proteins, and ribonucleoprotein complexes. A class of lncRNAs that appear to comprise the core of nuclear bodies are termed architectural RNAs (arcRNAs) and appear to function as the essential scaffold or platform of nuclear bodies. In Drosophila, the lncRNA:Hsrω RNA acts as an arcRNA. Mammalian lncRNAs that act as arcRNAs include NEAT1, IGS, and SATIII. (Chujo. et al., 2016; pubmed:26021608 ; FBrf0241600)

External links
    Disease synonyms
    Ortholog Information
    Human gene(s) in FlyBase
      Other mammalian ortholog(s) used
        D. melanogaster Gene Information (1)
        Gene Snapshot
        Heat shock RNA ω (lncRNA:Hsrω) is a developmentally expressed and stress-inducible long non-coding RNA gene, producing multiple nuclear and cytoplasmic transcripts. The long nuclear transcripts, in association with various heterogeneous nuclear ribonucleoproteins (hnRNPs), organize nucleoplasmic omega speckles to regulate multiple cellular processes. [Date last reviewed: 2021-03-18]
        Molecular function (GO)
          Cellular component (GO)
          Gene Groups / Pathways
            Comments on ortholog(s)
            Orthologs and Alignments from DRSC
            DIOPT - DRSC Integrative Ortholog Prediction Tool - Click the link below to search for orthologs in Humans
            Other Genes Used: Viral, Bacterial, Synthetic (0)
              Summary of Physical Interactions (9 groups)
              RNA-protein
              Interacting group
              Assay
              References
              anti tag coimmunoprecipitation, quantitative reverse transcription pcr
              pull down, anti tag western blot
              anti tag coimmunoprecipitation, quantitative reverse transcription pcr
              electrophoretic mobility shift assay, autoradiography, anti tag coimmunoprecipitation, quantitative reverse transcription pcr, pull down, anti tag western blot
              anti bait coimmunoprecipitation, quantitative reverse transcription pcr
              pull down, anti tag western blot
              anti tag coimmunoprecipitation, quantitative reverse transcription pcr
              pull down, anti tag western blot, anti bait coimmunoprecipitation, primer specific pcr, southern blot
              electrophoretic mobility shift assay, molecular weight estimation by staining, clip, quantitative reverse transcription pcr
              Alleles Reported to Model Human Disease (Disease Ontology) (7 alleles)
              Models Based on Experimental Evidence ( 0 )
              Allele
              Disease
              Evidence
              References
              Modifiers Based on Experimental Evidence ( 7 )
              Allele
              Disease
              Interaction
              References
              Alleles Representing Disease-Implicated Variants
              Genetic Tools, Stocks and Reagents
              Sources of Stocks
              Contact lab of origin for a reagent not available from a public stock center.
              Bloomington Stock Center Disease Page
              Related mammalian, viral, bacterial, or synthetic transgenes
              Allele
              Transgene
              Publicly Available Stocks
              Selected Drosophila transgenes
              Allele
              Transgene
              Publicly Available Stocks
              RNAi constructs available
              Allele
              Transgene
              Publicly Available Stocks
              Selected Drosophila classical alleles
              Allele
              Allele class
              Mutagen
              Publicly Available Stocks
              P-element activity
              amorphic allele - molecular evidence
              Delta2-3 transposase
              References (9)