FB2026_01 , released March 12, 2026
FB2026_01 , released March 12, 2026
Human Disease Model Report: neurodevelopmental disorder with speech impairment and dysmorphic facies
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General Information
Name
neurodevelopmental disorder with speech impairment and dysmorphic facies
FlyBase ID
FBhh0001391
Overview

This report describes neurodevelopmental disorder with speech impairment and dysmorphic facies (NEDSID); NEDSID exhibits autosomal dominant inheritance. The phenotypic features and severity of this disorder are variable and may include susceptibility to schizophrenia. The human gene implicated in this disease is SETD1A, which encodes a component of a histone methyltransferase (HMT) complex that methylates histone H3 at Lys4 (H3K4); trimethylation of H3K4 is observed near the transcription start sites of most active genes. There is a single orthologous gene in Drosophila, Set1, for which multiple genetic reagents have been generated including loss-of-function and missense mutations, RNAi targeting constructs, and overexpression constructs. Dmel\Set1 is also orthologous to the human gene SETD1B.

The human SETD1A gene has not been introduced into flies.

Loss-of-function mutations of Dmel\Set1 are lethal. Targeted knockdown of Set1, effected by RNAi, in terminally differentiated postmitotic neurons of the mushroom body of the brain results in short- and long-term memory deficits; no morphological abnormalities are observed. These findings add support to the idea that H3K4 methylation plays a conserved role in regulating the function of adult neurons post-development.

Other genes involved in H3K4 methylation have been implicated in human diseases that impact neural function; see the Human Disease Model reports 'Kleefstra syndrome 2' (FBhh0000717) and 'intellectual disability, X-linked, syndromic, Claes-Jensen type' (FBhh0000849) for cases that have been modeled in flies.

[updated Sep. 2021 by FlyBase; FBrf0222196]

Disease Summary Information
Disease Summary: neurodevelopmental disorder with speech impairment and dysmorphic facies
OMIM report

[NEURODEVELOPMENTAL DISORDER WITH SPEECH IMPAIRMENT AND DYSMORPHIC FACIES; NEDSID](https://omim.org/entry/619056)

Human gene(s) implicated

[SET DOMAIN-CONTAINING PROTEIN 1A; SETD1A](https://omim.org/entry/611052)

Symptoms and phenotype

Neurodevelopmental disorder with speech impairment and dysmorphic facies (NEDSID) is characterized by developmental delay associated with mild to moderately impaired intellectual development or learning difficulties, behavioral or psychiatric abnormalities, and delayed speech and language acquisition. The phenotypic features and severity of the disorder are variable (summary by Kummeling et al., 2021; pubmed:32346159). [from MIM:619056; 2021.09.25]

Singh et al. (2016, pubmed:26974950) reported 7 patients with schizophrenia and learning difficulties who had heterozygous loss-of-function variants in the SETD1A gene.[from MIM:619056; 2021.09.25]

Genetics

Neurodevelopmental disorder with speech impairment and dysmorphic facies (NEDSID) is caused by heterozygous mutation in the SETD1A gene.[from MIM:619056; 2021.09.25]

Cellular phenotype and pathology
Molecular information

SETD1A encodes a component of a histone methyltransferase (HMT) complex that produces mono-, di-, and trimethylated histone H3 at Lys4. Trimethylation of histone H3 at lysine 4 (H3K4me3) is a chromatin modification known to generally mark the transcription start sites of active genes.

External links
Disease synonyms
NEDSID
Ortholog Information
Human gene(s) in FlyBase
    Human gene (HGNC)
    D. melanogaster ortholog (based on DIOPT)
    Comments on ortholog(s)

    Many to one: 2 human genes to 1 Drosophila gene.

    Other mammalian ortholog(s) used
      D. melanogaster Gene Information (1)
      Gene Snapshot
      SET domain containing 1 (Set1) encodes an enzyme that methylates histone H3 on lysine 4 at promoter-proximal regions of most RNA Polymerase II transcribed genes. It is the catalytic subunit of the COMPASS complex. [Date last reviewed: 2019-03-14]
      Gene Groups / Pathways
      Comments on ortholog(s)

      High-scoring ortholog of human SETD1A and SETD1B (1 Drosophila to 2 human). Dmel\Set1 shares 25% identity and 36-37% similarity with the human genes.

      Orthologs and Alignments from DRSC
      DIOPT - DRSC Integrative Ortholog Prediction Tool - Click the link below to search for orthologs in Humans
      Other Genes Used: Viral, Bacterial, Synthetic (0)
        Summary of Physical Interactions (6 groups)
        protein-protein
        Interacting group
        Assay
        References
        pull down, anti tag western blot, anti tag coimmunoprecipitation, peptide massfingerprinting, cosedimentation
        anti tag coimmunoprecipitation, anti tag western blot
        anti tag coimmunoprecipitation, peptide massfingerprinting, experimental knowledge based
        methyltransferase assay, western blot
        anti tag coimmunoprecipitation, peptide massfingerprinting
        pull down, anti tag western blot
        Alleles Reported to Model Human Disease (Disease Ontology) (2 alleles)
        Models Based on Experimental Evidence ( 2 )
        Modifiers Based on Experimental Evidence ( 1 )
        Allele
        Disease
        Interaction
        References
        Alleles Representing Disease-Implicated Variants
        Genetic Tools, Stocks and Reagents
        Sources of Stocks
        Contact lab of origin for a reagent not available from a public stock center.
        Bloomington Stock Center Disease Page
        Related mammalian, viral, bacterial, or synthetic transgenes
        Allele
        Transgene
        Publicly Available Stocks
        Selected Drosophila transgenes
        Allele
        Transgene
        Publicly Available Stocks
        RNAi constructs available
        Allele
        Transgene
        Publicly Available Stocks
        Selected Drosophila classical alleles
        Allele
        Allele class
        Mutagen
        Publicly Available Stocks
        References (4)