FB2026_02 , released June 18, 2026
Human Disease Model Report: intellectual disability, X-linked, syndromic, Claes-Jensen type
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General Information
Name
intellectual disability, X-linked, syndromic, Claes-Jensen type
FlyBase ID
FBhh0000849
Overview

This report describes intellectual disability, X-linked syndromic, Claes-Jensen type; an alternative designation of this disease is 'mental retardation, X-linked syndromic, Claes-Jensen type' (MRXSCJ). MRXSCJ exhibits X-linked recessive inheritance. The human gene implicated in this disease is KDM5C, which encodes a histone demethylase thought to be involved in the regulation of transcription and chromatin remodeling; it is one of 4 closely related genes in human. The human KDM5B gene is implicated in a subtype of intellectual disability (MIM:618109). There is a single orthologous gene in Drosophila, Kdm5, for which an amorphic mutation, RNAi-targeting constructs, and alleles caused by insertional mutagenesis have been generated.

The human KDM5C gene has not been introduced into flies.

This disease has been modeled in flies by introducing into Dmel\Kdm5 transgenes mutational changes analogous to those implicated in MRXSCJ. See the 'Disease-Implicated Variants' table below. In a background genotype that is amorphic for Kdm5, animals carrying the A512P missense mutation (analogous to KDM5C:p.Ala388Pro ) are viable and fertile but exhibit short-term and long-term memory deficits. Other variants implicated in MRXSCJ have been assessed for impact on development of the larval neuromuscular junction. In general, the disease-associated mutations disrupt neuroanatomical development, cognition and other behaviors, and display a transcriptional signature characterized by the downregulation of many ribosomal protein genes.

[updated Nov. 2024 by FlyBase; FBrf0222196]

Disease Summary Information
Parent Disease Summary: intellectual disability, X-linked, syndromic
Symptoms and phenotype

Intellectual disability is characterized by impairments in intellectual functioning and adaptive behavior; symptoms must be present before a child becomes 18 years old (http://medical-dictionary.thefreedictionary.com/mental+retardation; 2016.01.19).

Intellectual disability can be subdivided into syndromic forms, characterized by cognitive impairment accompanied by dysmorphic features, malformations or neurological abnormalities, and nonsyndromic forms, characterized by cognitive impairment without additional features (Basel-Vanagaite, 2008; DOI: 10.1002/9780470015902.a0021454).

Specific Disease Summary: intellectual disability, X-linked, syndromic, Claes-Jensen type
OMIM report

[INTELLECTUAL DEVELOPMENTAL DISORDER, X-LINKED, SYNDROMIC, CLAES-JENSEN TYPE; MRXSCJ](https://omim.org/entry/300534)

Human gene(s) implicated

[LYSINE DEMETHYLASE 5C; KDM5C](https://omim.org/entry/314690)

Symptoms and phenotype

MRXSCJ is characterized by severe intellectual deficit associated with variable clinical manifestations including spasticity, cryptorchidism, maxillary hypoplasia, alopecia areata, epilepsy, short stature, impaired speech and behavioral problems (DOID:0060809).

Genetics

MRXSCJ exhibits X-linked recessive inheritance; caused by mutation in the KDM5C gene. [from MIM:300534; 2018.07.19]

Cellular phenotype and pathology
Molecular information

KDM5C, also known as JARID1C, encodes a histone demethylase that specifically demethylates Lys-4 of histone H3; its DNA-binding motifs suggest this protein is involved in the regulation of transcription and chromatin remodeling. [Gene Cards, KDM5C; 2018.07.20]

External links
Disease synonyms
mental retardation, X-linked, syndromic, Claes-Jensen type
MRXSCJ
syndromic X-linked mental retardation JARID1C-related
syndromic X-linked mental retardation KDM5C-related
Ortholog Information
Human gene(s) in FlyBase
    Human gene (HGNC)
    D. melanogaster ortholog (based on DIOPT)
    Comments on ortholog(s)

    Many to one: 4 human to 1 fly.

    Other mammalian ortholog(s) used
      D. melanogaster Gene Information (1)
      Gene Snapshot
      Lysine demethylase 5 (Kdm5) encodes a trimethyl H3K4 histone demethylase that regulates transcription through both demethylase-dependent and demethylase-independent mechanisms. It has roles in regulating cell growth, circadian rhythm, stress resistance, hematopoiesis and fertility. [Date last reviewed: 2019-03-14]
      Cellular component (GO)
      Gene Groups / Pathways
      Comments on ortholog(s)

      Moderate- to high-scoring ortholog of human KDM5A, KDM5B, KDM5C, and KDM5D (1 Drosophila to 4 human). Dmel\Kdm5 shares 39-42% identity and 53-57% similarity with the human genes.

      Orthologs and Alignments from DRSC
      DIOPT - DRSC Integrative Ortholog Prediction Tool - Click the link below to search for orthologs in Humans
      Other Genes Used: Viral, Bacterial, Synthetic (0)
        Summary of Physical Interactions (22 groups)
        protein-protein
        Interacting group
        Assay
        References
        bimolecular fluorescence complementation, fluorescence microscopy
        anti bait coimmunoprecipitation, Identification by mass spectrometry, western blot
        anti bait coimmunoprecipitation, western blot
        anti bait coimmunoprecipitation, Identification by mass spectrometry, anti tag coimmunoprecipitation, western blot, ion exchange chromatography, molecular sieving, affinity chromatography technology
        anti tag coimmunoprecipitation, peptide massfingerprinting, experimental knowledge based
        ion exchange chromatography, molecular sieving, affinity chromatography technology, Identification by mass spectrometry
        anti bait coimmunoprecipitation, Identification by mass spectrometry, western blot, anti tag coimmunoprecipitation
        pull down, autoradiography, anti tag coimmunoprecipitation, anti tag western blot
        affinity chromatography technology, molecular sieving, molecular weight estimation by staining, anti tag coimmunoprecipitation, Identification by mass spectrometry, ion exchange chromatography, anti bait coimmunoprecipitation, western blot, anti tag western blot
        anti bait coimmunoprecipitation, western blot
        enzymatic study, peptide massfingerprinting, pull down, molecular weight estimation by staining
        molecular sieving, western blot, anti bait coimmunoprecipitation, ion exchange chromatography, affinity chromatography technology, Identification by mass spectrometry, anti tag coimmunoprecipitation
        anti bait coimmunoprecipitation, western blot, pull down, autoradiography
        anti bait coimmunoprecipitation, western blot, anti tag coimmunoprecipitation, Identification by mass spectrometry
        anti tag coimmunoprecipitation, Identification by mass spectrometry, western blot, anti bait coimmunoprecipitation, peptide massfingerprinting
        pull down, autoradiography, anti bait coimmunoprecipitation, western blot
        bimolecular fluorescence complementation, fluorescence microscopy
        Alleles Reported to Model Human Disease (Disease Ontology) (15 alleles)
        Models Based on Experimental Evidence ( 13 )
        Allele
        Disease
        Evidence
        References
        Modifiers Based on Experimental Evidence ( 5 )
        Alleles Representing Disease-Implicated Variants
        Genetic Tools, Stocks and Reagents
        Sources of Stocks
        Contact lab of origin for a reagent not available from a public stock center.
        Bloomington Stock Center Disease Page
        Related mammalian, viral, bacterial, or synthetic transgenes
        Allele
        Transgene
        Publicly Available Stocks
        Selected Drosophila transgenes
        Allele
        Transgene
        Publicly Available Stocks
        RNAi constructs available
        Allele
        Transgene
        Publicly Available Stocks
        Selected Drosophila classical alleles
        Allele
        Allele class
        Mutagen
        Publicly Available Stocks
        amorphic allele - molecular evidence
        Delta2-3 transposase
        loss of function allele
        ethyl methanesulfonate
        loss of function allele
        ethyl methanesulfonate
        loss of function allele
        ethyl methanesulfonate
        References (10)