FB2026_03 , released September 17, 2026
Human Disease Model Report: neurological disorder with or without progressive infantile liver disease
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General Information
Name
neurological disorder with or without progressive infantile liver disease
FlyBase ID
FBhh0001603
Disease Ontology Term
Parent Disease
OMIM
Overview

This report describes a newly characterized disease, neurological disorder with or without progressive infantile liver disease; this disease exhibits autosomal recessive inheritance. The human gene implicated in this disease is YKT6, which encodes a SNARE protein that has multiple functions in different membrane trafficking events. There is a single orthologous gene in Drosophila, Dmel\Ykt6, for which a number of genetic reagents have been generated, including loss-of-function mutations, RNAi-targeting constructs, and overexpression constructs.

The human YKT6 gene has not been introduced into flies.

Animals carrying loss-of-function mutations of Dmel\Ykt6 typically die during the larval or pupal stage. Missense mutations analogous to human YKT6 variants associated with disease have been introduced into the fly Ykt6 gene. See the 'Disease-Implicated Variants' table, below. The ability of the variants to rescue the lethality associated with Ykt6 loss-of-function mutations has been assessed, leading to the conclusion that the two human YKT6 variants identified thus far are hypomophic alleles of differing severity.

[updated Oct. 2024 by FlyBase; FBrf0222196]

Disease Summary Information
Disease Summary: neurological disorder with or without progressive infantile liver disease
OMIM report
Human gene(s) implicated
Symptoms and phenotype
Genetics
Cellular phenotype and pathology
Molecular information

The YKT6 gene encodes a vesicular soluble NSF attachment protein receptor (v-SNARE) implicated in vesicular transport between secretory compartments. [GeneCards, YKT6; 2024.20.01]

YKT6 plays multiple functions in different membrane trafficking events, including endoplasmic reticulum to Golgi transport, early/recycling endosome to trans-Golgi network transport, constitutive secretory vesicles-plasma membrane fusion, and autophagosome-lysosome fusion (Ma et al., 2024, pubmed:38522068, and references cited therein).

External links
Disease synonyms
YKT6 syndrome
Ortholog Information
Human gene(s) in FlyBase
    Human gene (HGNC)
    D. melanogaster ortholog (based on DIOPT)
    Comments on ortholog(s)

    One to one: 1 human gene to 1 Drosophila gene.

    Other mammalian ortholog(s) used
      D. melanogaster Gene Information (1)
      Gene Snapshot
      YKT6 v-SNARE (Ykt6) encodes an R-SNARE localized to the Golgi apparatus and endosomes/lysosomes, to regulate the bi-directional transport between the endoplasmic reticulum and the Golgi apparatus. Ykt6 can form a prefusion SNARE complex with Syx17 and Snap29, to promote the fusion of autophagosomes with lysosomes. Through interaction with Syx13 and Snap29, it also mediates the fusion of Lamp1 carriers and secretory granules. [Date last reviewed: 2024-04-04]
      Gene Groups / Pathways
      Comments on ortholog(s)

      High-scoring ortholog of human YKT6 (1 Drosophila to 1 human).

      Orthologs and Alignments from DRSC
      DIOPT - DRSC Integrative Ortholog Prediction Tool - Click the link below to search for orthologs in Humans
      Other Genes Used: Viral, Bacterial, Synthetic (0)
        Summary of Physical Interactions (28 groups)
        protein-protein
        Interacting group
        Assay
        References
        experimental knowledge based
        experimental knowledge based
        pull down, western blot
        pull down, western blot
        experimental knowledge based
        experimental knowledge based
        experimental knowledge based
        anti tag coimmunoprecipitation, anti tag western blot
        experimental knowledge based
        experimental knowledge based
        experimental knowledge based
        experimental knowledge based
        experimental knowledge based
        experimental knowledge based
        experimental knowledge based
        experimental knowledge based
        experimental knowledge based
        experimental knowledge based
        anti tag coimmunoprecipitation, Identification by mass spectrometry, experimental knowledge based
        experimental knowledge based
        experimental knowledge based
        experimental knowledge based
        pull down, molecular weight estimation by staining, experimental knowledge based
        anti tag coimmunoprecipitation, anti tag western blot, pull down, molecular weight estimation by staining, western blot
        experimental knowledge based
        experimental knowledge based
        experimental knowledge based
        experimental knowledge based
        Alleles Reported to Model Human Disease (Disease Ontology) (5 alleles)
        Alleles Representing Disease-Implicated Variants
        Genetic Tools, Stocks and Reagents
        Sources of Stocks
        Contact lab of origin for a reagent not available from a public stock center.
        Bloomington Stock Center Disease Page
        Related mammalian, viral, bacterial, or synthetic transgenes
        Allele
        Transgene
        Publicly Available Stocks
        Selected Drosophila transgenes
        Allele
        Transgene
        Publicly Available Stocks
        RNAi constructs available
        Allele
        Transgene
        Publicly Available Stocks
        Selected Drosophila classical alleles
        Allele
        Allele class
        Mutagen
        Publicly Available Stocks
        amorphic allele - molecular evidence
        CRISPR/Cas9
        ethyl methanesulfonate
        References (4)