FB2026_03 , released September 17, 2026
Human Disease Model Report: neurodevelopmental disorder (postulated), CDKL1-related
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General Information
Name
neurodevelopmental disorder (postulated), CDKL1-related
FlyBase ID
FBhh0001631
Disease Ontology Term
Parent Disease
OMIM
Overview

This report describes a neurodevelopmental disorder postulated to be associated with de novo variants in the CDKL1 gene. CDKL1 encodes a CDC2-related serine/threonine protein kinase. There is a single orthologous gene in Drosophila, Dmel\Cdkl; the fly gene is the single ortholog of 5 paralogous genes in human.

Loss of Drosophila Cdkl causes a semi-lethal phenotype in pupae, killing 90% of the animals just prior to eclosion. The mutant flies that survive show climbing defects, heat-induced seizures, reduced longevity, and hearing loss. Dmel\Cdkl is expressed primarily in the peripheral nervous system.

Multiple UAS constructs of the human Hsap\CDKL1 gene have been introduced into flies, including wild-type and variants implicated in this disease (see 'Disease-Implicated Variants' table below). Functional complementation (heterologous rescue) is observed: expression of wild-type Hsap\CDKL1 rescues the semi-lethality and other phenotypes of a Cdkl loss-of-function mutation.

The disease-implicated variants of Hsap\CDKL1 characterized in flies do not act like loss-of-function mutations, since they are also able to rescue semi-lethality of a Cdkl loss-of-function mutation. However, over-expression of the disease-implicated variants results in reduced longevity; over-expression of wild-type Hsap\CDKL1 does not affect longevity. These results support the hypothesis that although these variants retain some normal functionality, they act as dominant negative mutations.

[updated May 2025 by FlyBase; FBrf0222196]

Disease Summary Information
Disease Summary: neurodevelopmental disorder (postulated), CDKL1-related
OMIM report
Human gene(s) implicated
Symptoms and phenotype

Detailed phenotypic data not available (Bereshneh et al., 2025; pubmed:40088891).

Genetics

Two individuals with neurodevelopmental impairments and heterozygous de novo variants in the CDKL1 gene were identified in disease databases (Bereshneh et al., 2025; pubmed:40088891).

Cellular phenotype and pathology
Molecular information

CDKL1 encodes a member of a large family of CDC2-related serine/threonine protein kinases that accumulates primarily in the nucleus. [GeneCards, CDKL1; 2025.05.14]

External links
Disease synonyms
neurodevelopmental disorder, CDKL1-related
Ortholog Information
Human gene(s) in FlyBase
Human gene (HGNC)
D. melanogaster ortholog (based on DIOPT)
Comments on ortholog(s)

Many to one: 5 human genes to 1 Drosophila gene.

Other mammalian ortholog(s) used
    D. melanogaster Gene Information (1)
    Gene Snapshot
    Cyclin dependent kinase-like (Cdkl) encodes a member of the Cyclin Dependent Kinases family. The gene is expressed widely in sensory neurons, except photoreceptors. The loss of function of Cdkl leads to climbing defects, hearing loss, reduced lifespan and heat induced seizures. [Date last reviewed: 2025-05-22]
    Cellular component (GO)
    Gene Groups / Pathways
    Comments on ortholog(s)

    High-scoring ortholog of human CDKL1 and CDKL4; low-scoring ortholog of CDKL2, CDKL5, and CDKL3.

    Orthologs and Alignments from DRSC
    DIOPT - DRSC Integrative Ortholog Prediction Tool - Click the link below to search for orthologs in Humans
    Other Genes Used: Viral, Bacterial, Synthetic (0)
      Summary of Physical Interactions (0 groups)
      Alleles Reported to Model Human Disease (Disease Ontology) (0 alleles)
      Alleles Representing Disease-Implicated Variants
      Genetic Tools, Stocks and Reagents
      Sources of Stocks
      Contact lab of origin for a reagent not available from a public stock center.
      Bloomington Stock Center Disease Page
      Related mammalian, viral, bacterial, or synthetic transgenes
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      Transgene
      Publicly Available Stocks
      Selected Drosophila transgenes
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      Transgene
      Publicly Available Stocks
      RNAi constructs available
      Allele
      Transgene
      Publicly Available Stocks
      Selected Drosophila classical alleles
      Allele
      Allele class
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      Publicly Available Stocks
      References (4)