FB2026_03 , released September 17, 2026
Human Disease Model Report: neurodevelopmental disorder, CDKL2-related
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General Information
Name
neurodevelopmental disorder, CDKL2-related
FlyBase ID
FBhh0001632
Disease Ontology Term
Parent Disease
OMIM
Overview

This report concerns a newly described neurodevelopmental disorder associated with de novo variants in the CDKL2 gene. CDKL2 encodes a CDC2-related serine/threonine protein kinase. There is a single orthologous gene in Drosophila, Dmel\Cdkl; the fly gene is the single ortholog of 5 paralogous genes in human.

Loss of Drosophila Cdkl causes a semi-lethal phenotype in pupae, killing 90% of the animals just prior to eclosion. The mutant flies that survive show climbing defects, heat-induced seizures, reduced longevity, and hearing loss. Dmel\Cdkl is expressed primarily in the peripheral nervous system.

Multiple UAS constructs of the human Hsap\CDKL2 gene have been introduced into flies, including wild-type and variants implicated in this disease (see 'Disease-Implicated Variants' table below). Functional complementation (heterologous rescue) is observed: expression of wild-type Hsap\CDKL2 rescues the semi-lethality and other phenotypes of a Cdkl loss-of-function mutation.

The disease-implicated variants of Hsap\CDKL2 characterized in flies do not rescue the semi-lethality of a Cdkl loss-of-function allele; thus these alleles do not appear to retain normal functionality. Over-expression of the disease-implicated variants results in reduced longevity; over-expression of wild-type Hsap\CDKL2 does not affect longevity. These results support the hypothesis that the variants act as dominant negative mutations.

[updated May 2025 by FlyBase; FBrf0222196]

Disease Summary Information
Disease Summary: neurodevelopmental disorder, CDKL2-related
OMIM report
Human gene(s) implicated
Symptoms and phenotype

The five individuals assessed presented with overlapping clinical manifestations, including global developmental delay, intellectual disability, childhood-onset epilepsy, dyspraxia, growth abnormality, and speech deficits (Bereshneh et al., 2025; pubmed:40088891).

Genetics

Heterozygous de novo variants in the CDKL2 gene are implicated (Bereshneh et al., 2025; pubmed:40088891).

Cellular phenotype and pathology
Molecular information

CDKL2 encodes a member of a large family of CDC2-related serine/threonine protein kinases. It accumulates primarily in the cytoplasm, with lower levels in the nucleus. [GeneCards, CDKL2; 2025.05.14]

External links
Disease synonyms
Ortholog Information
Human gene(s) in FlyBase
Human gene (HGNC)
D. melanogaster ortholog (based on DIOPT)
Comments on ortholog(s)

Many to one: 5 human genes to 1 Drosophila gene.

Other mammalian ortholog(s) used
    D. melanogaster Gene Information (1)
    Gene Snapshot
    Cyclin dependent kinase-like (Cdkl) encodes a member of the Cyclin Dependent Kinases family. The gene is expressed widely in sensory neurons, except photoreceptors. The loss of function of Cdkl leads to climbing defects, hearing loss, reduced lifespan and heat induced seizures. [Date last reviewed: 2025-05-22]
    Cellular component (GO)
    Gene Groups / Pathways
    Comments on ortholog(s)

    High-scoring ortholog of human CDKL1 and CDKL4; low-scoring ortholog of CDKL2, CDKL5, and CDKL3.

    Orthologs and Alignments from DRSC
    DIOPT - DRSC Integrative Ortholog Prediction Tool - Click the link below to search for orthologs in Humans
    Other Genes Used: Viral, Bacterial, Synthetic (0)
      Summary of Physical Interactions (0 groups)
      Alleles Reported to Model Human Disease (Disease Ontology) (0 alleles)
      Alleles Representing Disease-Implicated Variants
      Genetic Tools, Stocks and Reagents
      Sources of Stocks
      Contact lab of origin for a reagent not available from a public stock center.
      Bloomington Stock Center Disease Page
      Related mammalian, viral, bacterial, or synthetic transgenes
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      Publicly Available Stocks
      Selected Drosophila transgenes
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      Transgene
      Publicly Available Stocks
      RNAi constructs available
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      Transgene
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      Selected Drosophila classical alleles
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      Publicly Available Stocks
      References (4)