FB2026_01 , released March 12, 2026
FB2026_01 , released March 12, 2026
Physical Interaction report
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General Information
Interaction Type
Interacting Genes
FlyBase ID
FBig0000096238
Interaction Network
Interactions Browser links
cup network
eIF4E1 network
Reported Interactions
FBrf0167488-10.coIP.WB
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note

eIF4E

bait
cup 

Cup

prey
cup 
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
cup 
region
necessary binding region
aa 1-347

cup[Δ212] homozygous mutation eliminates binding.

Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Source was adult ovary of mutant fly line, heterozygous compared to homozygous; bait produced from endogenous gene; prey produced from endogenous gene.

Treated with RNAse.

FBrf0167488-11.coIP.WB
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
cup 

Cup

bait
cup 

eIF4E

prey
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
cup 
region
necessary binding region
aa 1-347

cup[Δ212] homozygous mutation eliminates binding.

Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Source was adult ovary of mutant fly line, heterozygous compared to homozygous; bait produced from endogenous gene; prey produced from endogenous gene.

Treated with RNAse.

FBrf0167488-8.coIP.WB
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note

eIF4E

bait
cup 

Cup

prey
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Source was adult ovary of wild-type fly line; bait produced from endogenous gene; prey produced from endogenous gene.

In the presence of RNase during immunoprecipitation this interaction was still observed, indicating that it is not mediated through RNA in the RNP complex; may be direct.

FBrf0167488-9.PD.WB
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note

eIF4E

bait

GST fusion

cup 

Cup

prey
cup 
cup 
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
cup 
region
mutation decreasing interaction
aa 342aa 347-348

Y342A; replacement of Tyr 342 with Ala severely reduces binding; within a conserved eIF4E binding sequence.

LM347/348AA; replacement of Leu-Met at 347-348 with Ala-Ala severely reduces binding; within a conserved eIF4E binding sequence.

cup 
eIF4E binding sequence
mutation disrupting interaction
aa 342-348

Replacement of the 3 conserved residues (342, 347, 348) virtually eliminates binding; within a conserved eIF4E binding sequence.

region
mutation disrupting interaction
aa 117

W117A; replacement of Trp 117 with Ala eliminates binding.

Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Source was adult ovary of transgenic fly line; bait produced from transgenic fusion construct; prey produced from endogenous gene.

Treated with RNase.

FBrf0167556-3.PD.A
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
cup 

Cup

bait

GST fusion

cup 
cup 

eIF4E

prey

[35]S label

Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
cup 
region
sufficient binding region
aa 335-359

Includes canonical eIF-4E-binding motif.

cup 
region
mutation disrupting interaction
aa 342

Y342A

region
mutation disrupting interaction
aa 117

W117A (reported as W106A)

Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Interaction in vitro; bait produced as a recombinant fusion protein; prey produced and labeled by in vitro translation.

FBrf0167556-4.PD.A
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
cup 

Cup

bait

GST fusion

cup 
cup 

eIF4E

prey

[35]S label

Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
cup 
region
sufficient binding region
aa 373-398
cup 
region
mutation disrupting interaction
aa 379-383

L379A/L383A

Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Interaction in vitro; bait produced as a recombinant fusion protein; prey produced and labeled by in vitro translation.

Interaction with this portion of cup protein is not affected by W117A (reported as W106A) mutation in eIF-4E protein.

FBrf0167556-5.AT.WB
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
cup 

Cup

bait

protein A tag

cup 
cup 

eIF4E

prey
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
cup 
region
mutation decreasing interaction
aa 342aa 379-383

Y342A; interaction greatly reduced.

L379A/L383A; interaction modestly reduced.

cup 
region
mutation disrupting interaction
aa 342, aa 379-383

Y342A plus L379A/L383A; interaction completely eliminated.

Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Source was cell extract of S2 cell line; bait produced from tagged transfected construct; prey produced from endogenous protein.

FBrf0167556-6.coIP.A
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
cup 

Cup

bait

FLAG tag

cup 

eIF4E

prey

[35]S label

Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
cup 
region
mutation decreasing interaction
aa 342

Y342A; interaction greatly reduced.

Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Interaction in vitro; bait produced as a recombinant fusion protein; prey produced and labeled by in vitro translation.

The W117A mutation of the eIF-4E protein does not further reduce the residual interaction observed for the cup Y342A mutation.

FBrf0167556-7.coIP.A
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
cup 

Cup

bait

FLAG tag

cup 

eIF4E

prey

[35]S label

Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
cup 
region
mutation decreasing interaction
aa 379-383

L379A/L383A; interaction modestly reduced.

region
mutation decreasing interaction
aa 117

W117A (reported as W106A)

Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Interaction in vitro; bait produced as a recombinant fusion protein; prey produced and labeled by in vitro translation.

The Y342A mutation of the cup protein does not further reduce the residual interaction observed for the eIF-4E W117A mutation; the L379A/L383A mutation of cup protein completely eliminates the residual interaction observed for the eIF-4E W117A mutation.

FBrf0167556-8.coIP.WB
Description
physical association
Collection
Cell line used
Participants
Corresponds to
Reported as
Role
Note
cup 

Cup

bait

eIF4E

prey
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Source was embryos of wild-type fly line; bait produced from endogenous gene; prey produced from endogenous gene.

In the presence of RNase during immunoprecipitation this interaction was still observed.

FBrf0167769-6.Y2H
Description
physical association
Assay
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
cup 

Cup

bait

fused to GAL4 DNA-binding domain

cup 

eIF4E

prey

fused to GAL4 activation domain

Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
cup 
region
sufficient binding region
aa 233–457

\'CupE\'; includes canonical eIF-4E binding motif

Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Source was yeast cell line; bait produced as transgenic fusion protein; prey produced as transgenic fusion protein (prey was previously cloned reagent).

Two-hybrid system: yeast GAL4-BD/GAL4-AD.

Both protein isoforms of eIF-4E tested; no difference observed.

FBrf0180643-1.Y2H
Description
physical association
Assay
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
cup 

Cup

bait

fused to GAL4 DNA-binding domain

eIF4E

prey

fused to GAL4 activation domain

Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
C-terminal region
sufficient binding region
aa 89-259
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Two-hybrid system: yeast GAL4-BD/GAL4-AD

Source was yeast cell line; bait produced as transgenic fusion protein; prey produced as transgenic fusion protein (prey from cDNA expression library).

11 of 24 positives represented clones of eIF-4E.

FBrf0180643-2.Y2H
Description
physical association
Assay
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note

eIF4E

bait

fused to GAL4 DNA-binding domain

cup 

Cup

prey

fused to GAL4 activation domain

cup 
cup 
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
cup 
eIF4E-binding motif
sufficient binding region
aa 324-453
cup 
eIF4E-binding motif
mutation disrupting interaction
aa 342-348

Y342A, L347A, M348A triple \'MEBS\' mutant

Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Two-hybrid system: yeast GAL4-BD/GAL4-AD

Source was yeast cell line; bait produced as transgenic fusion protein; prey produced as transgenic fusion protein (prey was previously cloned reagent).

FBrf0180643-3.PD.WB
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note

eIF4E

bait

GST tag

cup 

Cup

prey
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Interaction in vitro; bait produced as a recombinant fusion protein in bacterial system; prey derived from wild-type ovarian extract.

FBrf0180643-4.PD.A
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note

eIF4E

bait

GST tag

cup 

Cup

prey

[35]S label

cup 
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
cup 
eIF4E-binding motif
sufficient binding region
aa 324-453
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Interaction in vitro; bait produced as a recombinant fusion protein in bacterial system; prey produced and labeled by in vitro translation.

FBrf0180643-5.coIP.A
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note

eIF4E

bait

HA tag, [35]S label

cup 

Cup

prey

[35]S label

cup 
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
cup 
eIF4E-binding motif
sufficient binding region
aa 324-453
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Interaction in vitro; bait produced and labeled by in vitro translation; prey produced and labeled by in vitro translation.

FBrf0207757-8.coIP.WB
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note

eIF4E

bait
cup 

Cup

prey
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Source was cell extract of S2 cell line; bait produced from endogenous gene; prey produced from endogenous gene.

The eIF4E1-cup interaction decreases by treatment with increasing amounts of Thor.

FBrf0216681-1.coIP.WB
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
cup 

CUP

bait

HA tag

cup 
cup 

eIF4E

prey
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
cup 
4E-BM1
mutation disrupting interaction
aa 342, aa 347

Y342A plus L347A

cup 
4E-BM2
mutation decreasing interaction
aa 379, aa 383

L379A plus L383A; 4E-BM2 contributes to, but is not essential, for interaction.

Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Source was cell extract of S2 cell line; bait produced from transfected construct; prey produced from endogenous gene.

FBrf0219220-1a.XC
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note

eIF4E

neutral component

His tag

eIF4E

neutral component

His tag

eIF4E

neutral component

His tag

cup 

Cup

neutral component

GST tag

cup 
cup 
cup 
cup 

Cup

neutral component

GST tag

cup 

Cup

neutral component

GST tag

cup 
cup 
cup 
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
cup 
region
sufficient binding region
aa 296-425
cup 
eIF4E-binding site I
necessary binding region
aa 318-339
cup 
eIF4E-binding site II
necessary binding region
aa 362-376
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Interaction in vitro; proteins produced as a recombinant fusion proteins in bacterial system.

Proteins were coexpressed in bacteria to prevent rapid degradation of cup protein. The complex was subjected to limited proteolysis to promote crystallization.

FBrf0226072-14.ITC
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note

eIF4E

bait

His tag

cup 

CUP

prey

GB1 tag

cup 
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
C-terminal region
sufficient binding region
aa 69-248

coordinates relative to eIF4E1-PC

cup 
eIF4E-binding region
sufficient binding region
aa 325-376

coordinates relative to cup-PB

Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Interaction in vitro; bait produced as a recombinant fusion protein in bacterial system; prey produced as a recombinant fusion protein in bacterial system.

Kd = 9.1 nM

FBrf0226072-2.coIP.WB
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note

eIF4E

bait

HA tag

cup 

CUP

prey

GFP tag

Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
dorsal binding surface residue W106
mutation disrupting interaction
aa 106

W106A, coordinates relative to eIF4E1-PC

lateral binding surface residues I96 and I112
mutation disrupting interaction
aa 96-112

"II-AA" construct (I96A + I112A), coordinates relative to eIF4E1-PC

Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Source was cell extract of S2 cell line; bait produced from transfected construct; prey produced from transfected construct.

Mutation of residues on the lateral surface of eIF4E1 (I96A and I112A) specifically disrupts interaction with 4E-BP-type proteins (Thor, cup and 4E-T) but does not affect binding to eIF4G1.

FBrf0226072-6.coIP.WB
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
cup 

cup

bait

HA tag

eIF4E

prey
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Source was cell extract of S2 cell line; bait produced from transfected construct; prey produced from endogenous gene.

FBrf0226072-9.PD.MW
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
cup 

CUP

bait

MBP tag

cup 

eIF4E

prey

His tag

Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
C-terminal region
sufficient binding region
aa 69-248

coordinates relative to eIF4E1-PC

cup 
eIF4E-binding region
sufficient binding region
aa 325-376

coordinates relative to cup-PB

Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Interaction in vitro; bait produced as a recombinant fusion protein in bacterial system; prey produced as a recombinant fusion protein in bacterial system.

FBrf0229498-4.coIP.WB
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note

eIF4E

bait

HA tag

cup 

Cup

prey

GFP

cup 
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
cup 
interacting domain 1
sufficient binding region
aa 1-417
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Source was S2 cell line; bait produced from transfected construct; prey produced from transfected construct.

FBrf0262483-29.CL.FM
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
cup 

cup

bait

mCherry tag, fused to the plasma membrane

eIF4E

prey

EGFP tag

Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

cup was fused to a plasma membrane anchor. The ability of this chimera to recruit prey protein to the plasma membrane was taken as evidence of direct physical interaction.

Source was live S2R+ cells; bait and prey produced from endogenous genes.

External Crossreferences and Linkouts ( 1 )
Linkouts
MIST - An integrated Molecular Interaction Database
References (10)