FB2026_03 , released September 17, 2026
Physical Interaction report
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General Information
Interaction Type
Interacting Genes
FlyBase ID
FBig0000096987
Interaction Network
Interactions Browser links
esc network
Su(z)12 network
Reported Interactions
FBrf0151814-5.CH.WB
Description
physical association
Collection
Cell line used
Participants
Corresponds to
Reported as
Role
Note

Su(z)12

neutral component

Su(z)12

neutral component

Su(z)12

neutral component
esc 

ESC

neutral component
esc 

ESC

neutral component
esc 

ESC

neutral component
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Source was embryonic nuclear extract wild-type fly line; proteins produced from endogenous genes.

The complex of Su(z)12, E(z), Rpd3, esc and Caf1 has an apparent size of 600-650 kDa (gel filtration).

A histone methyltransferase activity was purified from embryonic nuclear extracts.

FBrf0151815-11.coIP.WB
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
esc 

ESC

bait

FLAG tag

SU(Z)12

prey
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

esc, E(z), Su(z)12 and Caf1 copurify as part of a polycomb repressive (PRC2) complex.

Source was baculovirus-Sf9 cell system; bait produced from tagged transgenic construct; prey produced from transgenic construct.

FBrf0151815-2.coIP.WB
Description
physical association
Collection
Cell line used
Participants
Corresponds to
Reported as
Role
Note
esc 

ESC

bait

FLAG tag

SU(Z)12

prey
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Source was embryonic nuclear extract of transgenic fly line; bait produced from tagged transgenic construct; prey produced from endogenous gene.

esc, E(z), Su(z)12 and Caf1 copurify as part of a polycomb repressive (PRC2) complex.

Nuclear extract was fractionated on a QAE-Sepharose comlum, then used for FLAG-affinity purification of esc containing complexes.

FBrf0151815-4.coIP.MS
Description
physical association
Collection
Cell line used
Participants
Corresponds to
Reported as
Role
Note
esc 

ESC

bait

FLAG tag

SU(Z)12

prey
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Source was embryonic nuclear extract of transgenic fly line; bait produced from tagged transgenic construct; prey produced from endogenous gene.

esc, E(z), Su(z)12 and Caf1 copurify as part of a polycomb repressive (PRC2) complex.

Nuclear extract was fractionated on a QAE-Sepharose comlum, then used for FLAG-affinity purification of esc containing complexes.

FBrf0151815-7.coIP.WB
Description
physical association
Collection
Cell line used
Participants
Corresponds to
Reported as
Role
Note

SU(Z)12

bait
esc 

ESC

prey

FLAG tag

Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Source was embryonic nuclear extract of transgenic fly line; bait produced from endogenous gene; prey produced from tagged transgenic construct.

FBrf0159213-5.coIP.WB
Reference
Description
physical association
Collection
Cell line used
Participants
Corresponds to
Reported as
Role
Note
esc 

ESC

bait

SU(Z)12

prey
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Source was embryonic nuclear extract of wild-type fly line; bait produced from endogenous gene; prey produced from endogenous gene.

esc and Su(z)12 are present in complexes of about 600 kDa or 1 MDa. The larger 1 MDa PRC2 complex is only observed in 0-16 hr embryos, not in 18-24 hr embryos.

Immunoprecipitation of esc from size fractionated extracts containing complexes of about 600 kDa or 1 MDa in size.

FBrf0187520-6.coIP.MW
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note

Su(z)12

bait

FLAG tag

esc 

Esc

prey
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Purified proteins visualized by Coomassie staining.

The E(z), Caf1, Su(z)12 and esc proteins interact as part of the tetrameric Polycomb repressive complex 2 (PRC2) complex.

Analysis of direct interactions suggests that E(z), Caf1, Su(z)12 proteins form a core trimeric complex (all paiwise interactions detected) to which esc protein binds via direct interaction with E(z).

Source was extract of Sf9 cell line; bait produced from transfected construct; prey produced from transfected construct.

FBrf0188105-2.PD.MW
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
esc 

ESC

bait

FLAG tag

Su(z)12

prey
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
VEFS domain
necessary binding region
aa 527-603
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Affinity purification of the esc-E(z) complex was carried out from a mixture of esc, E(z), Su(z)12, and Caf1-55 recombinant proteins. Deletion of E(z) II domain results in loss of Su(z)12 and Caf1-55 from the complex.

Interaction in vitro; bait and prey produced recombinant fusion proteins in baculovirus and insect cell system.

FBrf0188105-6.PD.MW
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note

Su(z)12

bait

FLAG tag

esc 

ESC

prey
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Interaction in vitro; bait and prey produced recombinant fusion proteins in baculovirus and insect cell system.

Affinity purification of the esc-E(z) complex was carried out from a mixture of esc, E(z), Su(z)12, and Caf1-55 recombinant proteins. Deletion of the E(z) II domain results in loss of esc and E(z) from the complex. E(z) II domain C363Y results in loss of esc and reduction of E(z) from the complex.

FBrf0201936-23.CH.WB
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
esc 

ESC

neutral component
esc 

ESC

neutral component
esc 

ESC

neutral component

SU(Z)12

neutral component

SU(Z)12

neutral component

SU(Z)12

neutral component
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Source was cell extract of Kc cell line; proteins produced from endogenous genes.

FBrf0201936-29.CH.WB
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
esc 

ESC

neutral component
esc 

ESC

neutral component
esc 

ESC

neutral component

SU(Z)12

neutral component

SU(Z)12

neutral component

SU(Z)12

neutral component
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Source was embryos of wild-type fly line; bait produced from endogenous gene; prey produced from endogenous gene.

FBrf0219425-3.CH.MW
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note

Su(z)12

neutral component

Su(z)12

neutral component

Su(z)12

neutral component
esc 

ESC

neutral component
esc 

ESC

neutral component
esc 

ESC

neutral component
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
VEFS-BOX
sufficient binding region
aa 507-630
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Su(z)12, E(z), Caf1 and esc were coexpressed in Sf9 cells and purified as a complex.

Source was baculovirus-infected Sf9 cell extract; proteins produced from transfected constructs.

Su(z)12, E(z), Caf1 and esc form the PRC2 (Polycomb repressive complex 2).

Residues 507-630 of Su(z)12 are sufficient for the formation of a PRC2 complex lacking Caf1.

FBrf0223458-2.coIP.MW
Reference
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
esc 

ESC

bait

FLAG tag

SU(Z)12

prey
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
N-terminal region
sufficient binding region
aa 1-682
VEFS domain N582
mutation disrupting interaction
aa 582

N582Y

VEFS domain W581
mutation disrupting interaction
aa 581

W581A

VEFS domain hydrophobic region
necessary binding region
aa 578-603

"Δ578-603"

E(z) interface
mutation disrupting interaction
aa 620-623

FILH to AAAA

HMTase stimulation region
mutation disrupting interaction
aa 569-570

D569A, V570A

Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Source was cell extract of baculovirus-infected Sf9 cell line; bait produced from transfected construct; prey produced from transfected construct.

PRC2 complex of Su(z)12, E(z), esc and Caf1-55.

Some Su(z)12 mutations have no effect on the Su(z)12-esc interaction: W555C, E574A, V585A, F590A and V591A.

FBrf0227292-566.TFIN
Description
physical association
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
esc 
unspecified role
esc 
unspecified role
esc 
unspecified role
unspecified role
unspecified role
unspecified role
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Source was cell extract of S2R+ cell line; proteins produced from transfected construct or endogenous gene.

HGScore = 37.244396

FBrf0228678-2.coIP.MW
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
esc 

Esc

bait

FLAG tag

Su(z)12

prey
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

FLAG-tagged esc was co-expressed with components of the PRC2 complex (Su(z)12, E(z) and Caf1-55) as well as Scm.

Source was cell extract of baculovirus-infected Sf9 cell line; bait produced from transfected construct; prey produced from transfected construct.

FBrf0237084-6.coIP.MW
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
esc 

Esc

bait

FLAG tag

Su(z)12

prey
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Source was nuclear extract of recombinant baculovirus infected Sf9 cells; bait produced from transfected construct; prey produced from transfected construct.

FBrf0238257-2.coIP.MW
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
esc 

ESC

bait

FLAG tag

SU(Z)12

prey
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Source was cell extract of Sf9 cell line; bait produced from baculoviral construct; prey produced from baculoviral construct.

FBrf02585471-7.PD.MW
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
esc 

esc

bait

FLAG tag

Su(z)12

prey
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

The PRC1 complex consists of Psc, Pc and Sce.

Interaction in vitro; bait and prey produced recombinant fusion proteins in baculovirus and insect cell system.

External Crossreferences and Linkouts ( 1 )
Linkouts
MIST - An integrated Molecular Interaction Database
References (13)