CAGTCAGTCACGAGTTTGTTACCACTGCGACAACACAACAGAAGCAGCACCAATAATATACTTGCAAATCCTTACGAAAA TCCCGACAAATTTGGAATATACTTCGATACAATCGCAATCATACGCACTGAGCGGCCACGAAACGCCGTCTAGAGCCGCC AAGATGCAGAACTGGGAGACGACAGCCACGACCAACTACGAGCAGCACAACGCCTGGTACAACAGCATGTTCGCGGCAAA TATCAAACAGGAGCCAGGTCATCATCTCGACGGGAATAGCGTGGCCAGCAGTCCGCGCCAATCGCCCATTCCCTCGACCA ATCACCTGGAACAGTTCCTCAAGCAGCAGCAGCAGCAGCTTCAGCAGCAACCCATGGATACCCTGTGCGCCATGACCCCA TCACCCAGCCAAAACGATCAAAACAGCCTGCAGCATTACGATGCTAACTTGCAGCAACAGTTGCTGCAGCAACAGCAGTA CCAGCAGCATTTCCAGGCAGCCCAGCAGCAACATCATCACCATCACCATCTGATGGGTGGATTCAATCCGCTGACGCCAC CTGGTCTGCCCAATCCCATGCAGCACTTCTATGGCGGCAATCTGCGACCCAGTCCGCAGCCCACGCCCACATCTGCCTCC ACAATTGCGCCCGTTGCAGTTGCCACTGGCAGCAGCGAGAAGTTGCAGGCACTAACACCACCCATGGATGTCACACCGCC TAAGTCGCCGGCCAAGTCGAGTCAGTCGAATATTGAGCCGGAGAAGGAGCACGATCAGATGTCGAACTCCAGCGAGGACA TGAAGTACATGGCCGAGTCCGAGGACGATGATACCAACATCCGGATGCCCATCTACAATTCGCACGGCAAGATGAAGAAC TACAAGTGCAAGACCTGCGGCGTGGTGGCCATCACCAAGGTGGACTTCTGGGCGCACACCCGCACCCACATGAAACCAGA CAAGATCCTGCAGTGCCCGAAGTGCCCGTTCGTCACCGAGTTCAAGCACCACTTGGAGTACCATATCCGGAAGCACAAGA ACCAAAAGCCCTTCCAGTGCGACAAATGCAGCTACACGTGTGTCAACAAATCCATGCTAAACTCGCACCGCAAGTCGCAC AGTTCTGTGTATCAGTACCGTTGTGCGGATTGTGATTACGCCACCAAGTATTGCCACAGCTTCAAGCTGCATCTGCGCAA GTATGGTCACAAGCCCGGCATGGTTTTGGACGAGGATGGCACCCCGAATCCCTCGTTGGTCATCGATGTTTACGGCACGC GTCGTGGTCCGAAGAGCAAGAATGGTGGACCGATTGCCAGTGGAGGAAGTGGCAGCGGCAGCCGGAAGTCAAATGTTGCA GCTGTCGCTCCGCAGCAACAGCAATCTCAGCCAGCTCAGCCAGTCGCCACATCTCAGCTGAGTGCCGCCCTGCAAGGATT CCCTCTGGTTCAAGGCAACTCCGCTCCTCCGGCGGCATCTCCAGTGCTCCCGCTGCCCGCCTCTCCTGCCAAGAGTGTGG CCAGTGTGGAACAGACGCCCAGCTTGCCCAGTCCAGCCAATCTTCTGCCTCCTCTGGCCAGCCTTCTGCAGCAGAACCGC AACATGGCCTTCTTCCCCTACTGGAACCTCAATCTCCAGATGCTGGCCGCCCAACAACAGGCCGCTGTCTTGGCCCAATT GTCGCCAAGAATGCGAGAGCAACTGCAGCAACAGAACCAGCAGCAGAGCGACAATGAGGAGGAGGAGCAGGACGATGAGT ACGAGCGTAAGTCAGTGGACTCTGCCATGGATCTGTCCCAAGGAACGCCAGTGAAGGAGGATGAGCAGCAGCAACAACCG CAGCAGCCGCTGGCCATGAATCTCAAGGTGGAGGAGGAGGCCACGCCTCTGATGAGCAGCTCGAATGCCTCGAGACGCAA GGGACGCGTCCTCAAGCTGGACACCCTGTTACAACTGCGATCGGAGGCCATGACATCTCCCGAGCAACTGAAAGTACCCA GCACACCCATGCCAACTGCATCCTCGCCCATTGCCGGACGCAAACCCATGCCCGAGGAGCACTGCTCGGGCACCAGTTCG GCAGATGAGTCGATGGAGACGGCCCATGTGCCGCAGGCCAATACCAGTGCCAGTTCGACGGCGTCCAGCTCGGGGAACAG CTCCAATGCCAGCAGCAATAGCAACGGCAACAGCAGCAGCAATTCCAGCAGCAATGGAACCACCTCAGCGGTTGCAGCTC CTCCATCCGGAACTCCGGCGGCGGCGGGTGCCATCTACGAGTGCAAGTACTGTGATATCTTCTTCAAGGACGCCGTGCTC TACACCATTCACATGGGCTACCACAGCTGCGACGATGTGTTCAAGTGCAACATGTGCGGCGAGAAGTGCGACGGACCCGT CGGCCTCTTCGTTCACATGGCCAGGAATGCTCACTCCTAAGTTCCCCATCACCATCACCTTGTTATTATTATTTATCACT ATTATCATATAATCGTTGTCCAGAATTGTATATATTCGTAGCATAAGTTTTCCAAACATTATTTTGTTGTCGAAAATTGT ACATAAGCCAATTAAGCCGCTAATTCTAGACCTAAGTTTATCTAACTATCCTAACTGTATTGAACTGTAGCCACCTTTCA ATCTGTCTCCTATACACTCTTGTATTTTCGAAATCGACTAAAAACCCTGAAAACGGTTTAAAAACTATCATAAATGCATG GAGAAACATAAGCCTAAGTTAAATCTAATTTGTAAGTTGAGTCAAGCGAAACAACCAAACAATACCAACAGTCCAAAGTC AAATTAATAAAATATAGTTTATAACATATACATAATGAGTATGTTTTCTAAAATAATTAATTAGTCTTATTTAACCTAAC ATATTCGTATATGCGCATAACACTCAGTTCTTTCTCTGATATTATTCTCTCAGTATTTTGTTAGTTGAAAGCGAATTCGA ATCGAACGAAATCAAATCAAATAAATCCAATTATTCAATATAATTTCACAAGTTTTTCGCTTTTTTTTTTTGTTGTTAAC CTTTTGGCAATAATGACAATATTTTCGATGCAACTGAAACTGACGAAAGAAGAAGTACAAATTTAGAGATTTTTAAAGAG TAGCTAAGATGCGCGAAATCTGAGCAACGGATCAAAATTAGTATTTACCCCATAAAATCTAAGTCGAGGTCATGAAACGA ATTTCGAGACTTAAGATGTGAGCCCAGTGTAATCCTTGATAAATCCCATTTTAAGTAAATTAAACTAGTCTAAGATATTT GCCCACGAAATGTTTTTATGCAATAACATAATAAAGATGAAGATATTATTATTATTAT
Extended 3' UTR based on RNA-Seq and/or EST data.
Sequences within the
first intron of this hb transcript were studied for binding of bcd protein
and used to study transcriptional activation. Five biding sites were identified
and a bcd binding consensus sequence was identified. These sequences are not
responsive in a bcd mutant background.