FB2026_02 , released June 18, 2026
Transcript: Dmel\Scm-RA
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General Information
Symbol
Dmel\Scm-RA
Species
D. melanogaster
Annotation Symbol
CG9495-RA
FlyBase ID
FBtr0082102
Feature type
Associated gene
Evidence Rank
Length (nt)
4069
Evidence Score
Genomic Location
Genomic Maps
cDNA Clones Consistent with the Transcript ( 39 )
cDNA Clones, Fully Sequenced
Exact Match
    Contained within the annotated transcript, internally consistent
    End(s) extend beyond the annotated transcript, internally consistent
      cDNA Clones, End Sequence Only (ESTs)
      End(s) extend beyond the annotated transcript, internally consistent
      Sequence
      CACCACTAGAAAAACAAATATGGCGGAACCGAGCGTAAAAGTAAAAAAAGTCTAACATTTTGGAGTTTAAGCGACTCAAA
      ATCATCTAATTTCGGATTGAAACCGAGTAACAAGATCCGCGCAGCGCTCTAAATATAAAGCTCGATATTTGGTGAACCAG
      AAACTAATTGTGCGGCTCGCGTTTGTTTTCGTTGGGTGATGCGATGCGATTTGGCCACCAATTTGTTATTACGTGACCTC
      AAGAACGCCGCAAAATTTCGCCAGGCCAAATCGAAAGAAATCGGAAAGTTAGTGCTGCAAAACAAAACTTGCTATTGGTG
      GCTAATGATTCAAGGCAGCCGCAATGCGATTTGACCGCCGGATCGGAACACACGAAATCGAAATCGCCTGAGATGCCAAG
      GGGCTTGCCGGCGCGAATCAGCAAGTGCGACTACTAGGACAGCCACGCGAGAAACCATGTCGGGCGGACGTGATAGCAGT
      ACCAGTAGCGGGAGCAATTCTGCTGCGCCAGGGGCCAGTACGAATGCCACCTCCTCCGCATCCGCATCCGCCTCCTCCAC
      ATCCACATCCGCATCCCCTGGAAGTACAACATCGCCCGCGTCCACGCAACGGCAACGAGGTAGACCGGCCAAACGAGCCA
      CATGCACCTGGTGCGGCGAGGGCAAGCTACCGCTGCAGTACGTCCTGCCCACGCAGACCGGCAAGAAGGAGTTCTGCTCG
      GAAACATGCATTGCCGAGTTCCGCAAGGCGTACAGCAAGGGGGCGTGCACCCAGTGCGACAACGTCATCCGCGATGGGGC
      GCCCAACAAGGAGTTCTGCTCGATCATGTGCATGAACAAGCACCAGAAGAAGAACTGCTCGACCAGGCACAGCGGCGGAT
      CGGCATCGGGCAAGGGTCTGGCGGAAAGCGAGCGCAAGTTGCTGGCCAGTGGAGCGCCCGCACCAACGGGGCCCTTTCAA
      TACGAGAGCTTCCACGTCTTCGACTGGGATGCCTATCTAGAGGAAACGGGTAGCGAAGCTGCTCCTGCAAAATGTTTCAA
      ACAGGCTCAGAATCCTCCCAACAATGATTTTAAAATCGGAATGAAGCTGGAGGCTTTGGATCCGCGCAACGTCACTTCCA
      CCTGCATTGCCACCGTGGTCGGAGTGCTTGGCTCCAGACTGCGGCTACGCCTGGATGGAAGTGACTCCCAGAATGACTTT
      TGGCGGCTGGTCGATTCTACGGAGATCCATGCTATTGGACACTGTGAAAAGAACGGTGGCATGCTGCAGCCGCCTCTGGG
      ATTCCGCATGAACGCATCCAGCTGGCCCGGCTATCTGTGCAAGATCCTCAACAATGCCATGGTGGCGCCAGAAGAGATCT
      TCCAGCCAGAGCCGCCAGAGCCAGAAGAAAACCTGTTCAAGGTGGGCCAGAAACTCGAGGCTGTCGACAAGAAGAACCCG
      CAGCTCATCTGCTGTGCAACAGTAGATGCAATCAAGGATGATCAGATCCATGTAACATTCGATGGTTGGCGAGGGGCATT
      CGACTACTGGTGCAATTACCGATCGCGTGACATTTTTCCCGCCGGCTGGTGCGCTAGAAGTTGTCATCCCATGCAGCCAC
      CGGGCCATAAATCGCGCATGGACTCCAGCTCTAGCAAACAGCGATGCCCTCGACCCCGCTACACTGTTGTAGCTGAGTCC
      GAGGCTATGGTTCCCGCTTCCCCTGCCACAGCCCACTTCCATCCGAACTGCAAGGGCGGTCCGTTCATCAACAATTCCAA
      ACTGCCCTGCATGGTGACGGGACCCACCTACCAAACGCTGGCCAAGCTTTGCCTGCAGGAGGTTTTAGCTGCCAGCACGG
      ATACGCAACAGCTCTCAAAGTTGCTGTTTGCCCTGGAAGGAGATGTTCATATCGTGACGGCAGCGGGGAAAAATTTCACA
      GTAAAAATACCATCGCCAATGCGAATGAAGGATGACGAAAGCCTCGCCCAATTCATCGAAACGCTGTGCACTACATGCCG
      GGCATGTGCGAATCTCATTTCCTTGGTCCACGAGACGGAGGAGTGCAAGAAGTGCGCCAATAGTCGGAAGCGTCAACTGA
      CTCAGTCAGCCACACCGCCTTCCTCGCCAGTGCTCGCCGACAAGCGAAACCGTCAATCCAACTCGGCAACGACATCACCC
      TCTGAGAAGATTATCAAGCAGGAATTGGCTGTCAAATCGCCAGTGGAGTCCAAGTCGAAAACTTCGACGAACAATGGCAA
      GGAGCCTGCAAGCCAGCAAAACAGCAATCACAGTCTCAACAATAACAACAACAGTGCCAGCAAGTCCAGCAACAAGGTGG
      TCATCAAATCGGAGCCCAACGGAGCGAACGCGCAGACTTCCTCCACAACGCAGGCTCTGCGCAAAGTACGCTTCCAACAC
      CACGCAAACACGAATACGAATAGCTCTGCGACAAACGGAAACCAGGATACGAGCCAGACCACGCACGTATCTACCAGCCA
      TTGCAGCAGCTCGTCAACGTCGTCCAGCACGAGCCTAGCCGGAGGATCGGCGAACACCAGCACAATTGGCAAATACCTGG
      CACCTCTTGTGGCAGAAGTTCATCCAGAGCAGGCCAATGTAAAGCCCTCGAATAGCTACTACAAGAGTCCGACGACGCTC
      TCGTCAAGCGCCTCGTTGCCGACATCCGTGTCCACGCCGTTCACGGGCTGCCAGTCAGCCTCGTCCACTGCACTGGCTGC
      AGGTGGAGTTACAGCGGCTAAGGCGGCCACCGCGCCGGCTGGAGCAGCGGCAACTGCGGGAGCTTCTCCGAGCTACACCG
      CGATTACCTCACCCGTGAGCACGCCCACTTCTGCTTTGGCAAACTCACATCTGCGGTCGCAGCCGATCGACTGGACCATC
      GAAGAGGTGATCCAGTACATCGAGAGCAACGACAACTCCCTTGCAGTTCATGGTGATCTCTTCCGAAAGCACGAAATCGA
      TGGTAAAGCTTTATTATTGCTAAATTCAGAGATGATGATGAAGTACATGGGCCTGAAGCTAGGACCAGCCTTAAAAATCT
      GCAATTTAGTCAATAAGGTCAATGGTCGTCGAAATAATCTGGCACTCTAAACAGAAAAACATTAAGTTTCAGGCAGCGGA
      CTCGGTTCGGGTTTGACTTATATAGAAATTGTTAACAAATTAGTACCTCCCTTTAACGTAAAGCAAAGCAAACATGAACG
      ATATTCATAGATGTGTTATGTGTTGGCCATTCATGAAGAAAAAACCCCTACCCTATTTTATTATATTGATAATATAAAAC
      ACGCTATAACAAATGTAATCGCGAAGACATGAAATTCCCTATACAAAATCAATCGCATAACAAATTATACACAGTCAAGC
      TCCGGTTTTCAAAACCATTATTATTAATTTTTTTCCAACTGCTCGTGATTCTTTTTTTGGAATACACATTTACAAATTGA
      TTTATTTAGACAAAATTATTATACTTGAATTAGGAATTTTTATAGGTTTATTCAAATTTACCCAGTCAAAGGAGTGGAGT
      ATTCGTACACACACAATAATTAGTTTATCCATCTATTTCGAAAAATGTGAAATAGTTCTCAATTGGACACAAAATGATTC
      GACTTTTTCGAAAACTGGAGCTCGGCTACCAAAATCGCAATGCACATACATTATATTTATTACACATAAAAACACGCACA
      TTAGACACCAAAATCTATCCGACACAAAAGAAATGATAATTAACTTTAGAATAGGCGAGAAAATAAAAACCAATATTAAA
      TGATTGTACATATTTTACATCTAATTTTGTAATTATGTATCAATTGCGTTTCCTAACTATAACAATATTTAATTAGTCAT
      TAAACAGGTTGAAGATTTAATTTCTATTAAGTTATTGAAATTGAATATCAGTTTTTAGTTAATTATTCACATGCAGTTAA
      GGTCATTTTTGCATATAAGAAACGCTTCCTTTCAAAGTTTTGCAATATATGCGATATATAAATGAGAGTAACATTCGGTC
      GTGTAAAATATTGCAATAAGTCTCATTATGTTAACCCAGCATCCACTTACAAATACAAAAATTAAATAG
      
      Other Products of this Gene
      Other Transcripts
      Name
      FlyBase ID
      Length (nt)
      FBtr0306008
      3767
      Polypeptides
      Derived from THIS transcript
      Name
      FlyBase ID
      Length (aa)
      FBpp0081580
      877
      Derived from OTHER transcripts
      Name
      FlyBase ID
      Length (aa)
      FBpp0297150
      877
      Comments

      Extended 3' UTR based on RNA-Seq and/or EST data.

      The 4.1 and 3.8 kb Scm transcripts differ only in the

      use of alternative polyadenylation sites. Both transcripts are expressed

      maternally, while the 4.1 kb transcript is the predominant zygotic form.

      External Crossreferences and Linkouts ( 1 )
      Crossreferences
      RefSeq - A comprehensive, integrated, non-redundant, well-annotated set of reference sequences including genomic, transcript, and protein.
      Synonyms and Secondary IDs (3)
      Reported As
      Symbol Synonym
      CG9495-RA
      Scm+R4.1
      Secondary FlyBase IDs
      • FBtr0001499
      • FBtr0001500
      References (3)