FB2026_03 , released September 17, 2026
Transcript: Dmel\loco-RC
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General Information
Symbol
Dmel\loco-RC
Species
D. melanogaster
Annotation Symbol
CG5248-RC
FlyBase ID
FBtr0084276
Feature type
mRNA
Associated gene
Dmel\loco
Evidence Rank
Length (nt)
3160
Evidence Score
Genomic Location
Genomic Maps
cDNA Clones Consistent with the Transcript ( 38 )
cDNA Clones, Fully Sequenced
Exact Match
    Contained within the annotated transcript, internally consistent
    End(s) extend beyond the annotated transcript, internally consistent
      cDNA Clones, End Sequence Only (ESTs)
      Contained within the annotated transcript, internally consistent
      End(s) extend beyond the annotated transcript, internally consistent
        Sequence
        Sequence Downloader
        TCACAGATACTTTTGCGTTTGAATCGACGGGTTCGCGGCTCTCGGCGCGGCTTCCATTTTTCCGAAAGATACAAGTACTT
CGAAGTGAAATAAAGCAATTACATAAAGTCCAAAGAGTGCAGTGCAGTGCCGCGTTGTGAATTCCAGTGCGAAAGTATAG
AAAAAGCCAATTGACAAAAGCGTCACGTTTTCGCTTTCTGCCATTGTATTGCCCACGCACTCACACCAGCACACACACCT
TGTCACCTGGAATACCGCAAAAATTTTAAAGAAATTCAGCCGCAAAGCCGCAATAGCTTAAGAAATCCAGAGAATCCGAA
GGTTCGTTCTGGTTTATCAACGCCTATGAACCGCGCTCTGCCCGCCAATGCCTCGCCCTTCCGCCGAGCCTGGGGACAGT
CTTCCTTCCGCACTCCCCGTTCCGACAAGGTGGCCAAAGAGCAGCAGCAGCTAGGACAGTCGTCGCCCGTAAGACGCACT
GCCTCGATGAACGCCTCCGACAACGATATGTACATCAAGACGCTAATGCTGGACTCGGATCTGAAGTCATCGCGCAGCCA
GCACCAGCTCAGTCTGCTGCAGGTGCCCAAGGTACTGACCACGCCTGCACCGCCCTCCGCCATTACCGCGTCCGTTGCTG
CAGAGGGTGCGGCTCAAGACCACGGCTGTCCCAGCAGTTGGGCCGGCTCCTTTGAACGGATGCTACAGGATGCCGCTGGC
ATGCAGACGTTCTCGGAGTTTCTCAAGAAGGAGTTCTCCGCGGAGAACATATACTTCTGGACCGCCTGCGAACGTTATCG
TCTGCTGGAATCTGAGGCGGATCGAGTGGCTCAGGCTCGCGAGATCTTTGCCAAGCATTTGGCCAACAACAGCAGTGATC
CCGTCAATGTGGACTCGCAGGCACGCAGCCTTACGGAGGAGAAGCTGGCCGATGCCGCTCCGGACATCTTTGCGCCGGCA
CAGAAGCAGATTTTCAGCCTGATGAAGTTTGATAGCTATCAGCGTTTCATTCGTTCGGACTTGTACAAAAGCTGCGTGGA
GGCGGAGCAGAAGAACCAGCCACTGCCTTACAGCGGATTGGATCTAGACGAGCTGCTGAAGACAAATTTTCACTTAGGTG
CCTTCTCCAAGCTCAAAAAATCGGCTAGCAATGCTGAGGATAGAAGACGGAAAAGTCTGCTTCCCTGGCACCGAAAGACG
CGGAGTAAGTCCCGCGACCGCACCGAGATAATGGCTGACATGCAGCACGCGCTGATGCCGGCGCCACCAGTACCACAAAA
TGCCCCGCTCACCAGTGCCTCACTCAAACTTGTCTGCGGACAGAATTCCTTGAGCGATCTGCACAGCTCTAGGTCATCTT
TGTCCTCGTTTGATGCGGGCACAGCCACTGGCGGACAAGGAGCCAGTACGGAGAGCGTGTATTCGTTGTGCCGGGTGATC
CTCACCGATGGAGCCACCACCATAGTGCAGACAAGACCTGGAGAAACAGTGGGAGAACTGGTCGAACGTTTGCTGGAAAA
GAGGAACCTCGTGTATCCCTACTATGACATAGTGTTCCAGGGCAGCACCAAGTCGATCGATGTGCAGCAGCCATCGCAAA
TCCTGGCCGGTAAGGAGGTGGTAATCGAGCGCCGTGTGGCTTTCAAGCTGGACCTGCCCGATCCGAAGGTGATCTCGGTG
AAGAGTAAACCCAAGAAGCAACTGCACGAGGTGATCCGACCAATACTCAGCAAGTACAACTACAAGATGGAGCAGGTGCA
GGTGATCATGAGGGATACTCAAGTGCCAATCGACCTCAATCAGCCGGTTACCATGGCCGATGGCCAGCGACTGCGCATCG
TGATGGTGAATTCGGATTTTCAGGTAGGCGGCGGCAGTAGCATGCCGCCGAAGCAAAGCAAACCTATGAAGCCACTGCCG
CAGGGTCATTTGGATGAGCTAACGAACAAGGTGTTCAACGAGCTGCTGGCCAGCAAGGCTGATGCAGCGGCCAGCGAGAA
GTCGCGGCCTGTCGATCTGTGCTCCATGAAGTCCAACGAGGCGCCCTCGGAGACATCATCGCTCTTTGAACGCATGCGGC
GTCAGCAGCGCGATGGCGGCAACATTCCGGCTAGCAAGCTACCTAAGCTCAAGAAGAAGTCCACTAGCAGCAGCCAACAA
TCCGAGGAGGCAGCGACAACTCAAGCAGTCGCGGATCCCAAGAAGCCAATTATAGCCAAGCTAAAAGCGGGTGTGAAGCT
GCAGGTGACGGAGCGAGTAGCCGAGCACCAAGATGAACTACTCGAGGGCCTAAAGCGAGCACAGCTGGCACGACTGGAGG
ATCAGCGTGGCACCGAAATCAACTTCGACTTGCCTGATTTTCTGAAAAACAAGGAGAATCTCAGCGCAGCTGTATCAAAG
CTGCGCAAGGTGCGCGCCAGCTTGAGTCCCGTGAGCAAGGTACCCGCCACGCCCACCGAAATTCCACAGCCGGCGCCACG
TCTCTCCATCACACGTAGCCAACAGCCGGTGTCGCCCATGAAGGTGGATCAGGAGCCAGAGACTGACTTGCCTGCCGCGA
CGCAGGATCAAACGGAATTCGCAAAAGCGCCGCCACCGCTGCCGCCAAAGCCAAAGGTGCTGCCCATCAAGCCTTCCAAT
TGGGGCGTGGCTCAGCCGACGGGCAACTATTGCAACAAGTACTCCCCCAGCAAACAGGTGCCAACATCACCCAAAGAAGC
CTCCAAACCTGGAACGTTTGCGAGCAAAATACCACTGGATCTGGGACGAAAGTCTCTGGAGGAGGCGGGCTCGCGGTGTG
CATACCTCGACGAGCCCAGCAGCAGCTTTGTGTGATATAAGTGCGCCCACGTACTTGAAATGGCTTTACTGATCTTGCTT
GTATATATATGTGCACTATTTATTGATACTTTATATCCTATTCCCTATTCTCTAAATGTCCAAACAATCCATGACGAGCT
TTTGTATGTTATCTACTGAGTGATCGCCTGTATTTATAATAACTAGCAACAATAAGCATTAGCTTTACTACATTTTGAAT
AAATATATCAAAAGTAATAAGTATACGTATTATTGAATAATATATGTTCCTAGGTGGCTTACCTACCTAAGGTGGTTTAC
AAGAAAATTGAGTCTACATTTTCCATTCATCTTAGAGGGT
        Other Products of this Gene
        Other Transcripts
        Name
        FlyBase ID
        Length (nt)
        loco-RB
        FBtr0084275
        3993
        loco-RD
        FBtr0084273
        5330
        loco-RF
        FBtr0304669
        3133
        loco-RH
        FBtr0309249
        3519
        Polypeptides
        Derived from THIS transcript
        Name
        FlyBase ID
        Length (aa)
        loco-PC
        FBpp0083669
        829
        Derived from OTHER transcripts
        Name
        FlyBase ID
        Length (aa)
        loco-PB
        FBpp0083668
        1175
        loco-PD
        FBpp0083666
        1541
        loco-PF
        FBpp0293211
        782
        loco-PH
        FBpp0301188
        846
        Comments

        mRNA structure inferred from FlyBase alignment of EST and cDNA sequences to reference sequence. EST sequences were used to extend the 5' end of the predicted mRNA.

        Transcript terminates at site supported by polyadenylated cDNA.

        External Crossreferences and Linkouts ( 1 )
        Crossreferences
        RefSeq - A comprehensive, integrated, non-redundant, well-annotated set of reference sequences including genomic, transcript, and protein.
        Synonyms and Secondary IDs (3)
        Reported As
        Symbol Synonym
        CG5248-RC
        (FlyBase, 1996-)
        loco-RC
        (FlyBase, 1996-)
        loco+R2.9
        (FlyBase, 1996-)
        Secondary FlyBase IDs
        • FBtr0006057
        References (3)