FB2026_02 , released June 18, 2026
Transcript: Dmel\pHCl-2-RA
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General Information
Symbol
Dmel\pHCl-2-RA
Species
D. melanogaster
Annotation Symbol
CG11340-RA
FlyBase ID
FBtr0085766
Feature type
mRNA
Associated gene
Dmel\pHCl-2
Evidence Rank
Length (nt)
2244
Evidence Score
Genomic Location
Genomic Maps
cDNA Clones Consistent with the Transcript ( 1 )
cDNA Clones, Fully Sequenced
Exact Match
    Contained within the annotated transcript, internally consistent
      End(s) extend beyond the annotated transcript, internally consistent
      cDNA Clones, End Sequence Only (ESTs)
      Contained within the annotated transcript, internally consistent
        End(s) extend beyond the annotated transcript, internally consistent
          Sequence
          Sequence Downloader
          AGATATTGGGTAGAACGAAGCGCTGCTCCGAAGAGCACGAACCCGAACCAAGCCATCCGACTTCCGATATTCCGATACTC
CGCTACTGGCGGACTGGACAGGCGTTTCGCCAACTCGCTGCCAAAAAAGCTACAAGTTGAATAGTTGATCGAGAAAGGGC
CAAGCGGATGGCCGCGAAAACGCAGCGCGCTAAAAAGAAAATATAAAATCGTCGCGAAATCGTCGCACTCCTGAAAACTT
ACCCACTGAGTCCCGTGATTCGAAAAAACAACGACGTGCAAGACATGACTAACCACCAGAGAATGGATACACTTGGGATT
TTCGTACTCATCAGCTACTTGGGATTATCAAGTGCGGCCGGAGTTCATCTAGGCGATCTTCAACAGAATCTGGCCGCCAA
TGGATCGGTGGTGGTGTCGCCTTTGAACACCACGGATGCTTTCAGTGTGTCCATCAACCTGTCGCAATCGACTGTGAACA
ATTGTCCTTCGCTGAAAAACGCAGAGTCCATGGCGCTGATGGAGCTGCTGACGAGACTAACCGCCCCCTGTCGCTATGAC
AGGATGGTTCCACCCGTGGTCCACAACAAAGATGGTGAGGAGGTACCCATGGACATATATGCCCGGTTTTACATATATGT
GATGAAGAACCTGGACTCGAGTGACCTGCAGTTTACGGTGCAGGGTCTGCTGCAGTTGCGATACCTGGACCCGCGCCTGG
CCTTCTCCAGCTATCTGCCTAACCGAAGGCAGCCCATAATGGGGGAGTCGGAACTGAAGAAGATGCTCTGGGTGCCACAT
ATATTCCTGACCAACGAACAGGCCTCCACTGTCCTGGGCACCAGCGCCAAGGACGAGCTGACCAGCATTTATCCGAATGG
CACAGTTCTTACATCCACGCGGCTGCAGGCCACACTGTACTGCTGGATGAACTTCCAGAAGTTTCCGTTTGATGAGCAGA
AGTGTAAGACCACATTGGAAAGTTGGATGTACAACACCACGCTGGTGCAACTCCACTGGGAGACCGATAACCCAGTGAGT
TTCGACAAGCAACTTCAGCTGACGGAATACAACCTAATTGGGTCGCTGTACAACGAATCCATCCGAGTGTCCAACGAATC
CTACATGTCCCATGGCTCCTTGGAGGGCAACTACAGCATCATTAGCTTCACCGTTCTGCTTACTCGGGAAGTGGGCTACT
ACGTGATCGACTACTTTCTGCCCTCGATCATGATAGTCACCATTTCGTGGGTGTCCTTCTGGCTGCAGGCGGATCAAACC
CCCGCAAGGACTACTCTGGGCTGCACCACGCTCCTATCCTTCATCACTCTGTCCTTGTCCCAGGAGAACAATCTGATGAA
GGTGAGCTACGTGACCATGTCGGAGGTGTGGTTCCTGGTCTGCACCATCTTCATTTTCGGCAGCCTGGTGGAGTTCGCCT
TTGTCAACACCATCTGGAGGCGAAACAACGATCTGCAACTCAAGAAGCGAACCACCAAGTATATAGTCAAGTCCACATTT
GTCCCACATCTGAAGAAACATCGGCGGCATGGATATAGAAGGACCGATAGCACTATGAGCACCATGAGCACCACCAGCAT
GGACAAGACCTGCGGTCCCAACAACACCGTGATCACCATAGAGACACCAATTATTATTGGAGGCAGTCTTAGTCGCGAGG
ACTCGGCCATTAGCTTGGACGAGCAGGACGAGACCTCCACCTCGGAGTCCAGCGATTCGTCGAAGGAGAAACCCGCGCAG
ACCTTCGCCACCATGACACCCAAGGAGGTGTCCCTGTGGATCGACCGCAAGATGCGGTTCGTCTTCCCTCTGTCCTTCAT
CGTGTTCAACGCCTTGTTTTGGACCCTGGTCTACTGCCTTTGAGGTGTTCGTCAGGGAAAGAGAGCCATTCTGTGATCCT
AGAGCATCCTCACCCTTGCCTCACTAGCCTTAGTTTCCAAAGGTACGAAGACACTTGCTTAACTTTCGGCCGACTGACTT
AATCTTCTCGCAAGGACAGACACTAATCTTGTCAAAATCCCACCCCAGCTATGGCAATAAATGTTTTCAGGCTCTGCAAT
TCGAAAATGGTTTAATTATTCCCCCAGTCGGCCGAATCTTGAGCAAGTGTCGCGCACCCTTAGTCCACAAATCCCCGACA
GGTGATGGAGAGATCCCTTGCTTTTCGGGGCAGTACGTGTTATGTAGTCTGTATTTGTTTCTAATAAATTATACGTTTTG
ATAC
          Other Products of this Gene
          Other Transcripts
          Name
          FlyBase ID
          Length (nt)
          pHCl-2-RB
          FBtr0347502
          3815
          Polypeptides
          Derived from THIS transcript
          Name
          FlyBase ID
          Length (aa)
          pHCl-2-PA
          FBpp0085128
          526
          Derived from OTHER transcripts
          Name
          FlyBase ID
          Length (aa)
          pHCl-2-PB
          FBpp0312576
          526
          Comments

          5' UTR based on RNA-Seq and/or EST data.

          Transcript terminates at site supported by polyadenylated cDNA.

          External Crossreferences and Linkouts ( 1 )
          Crossreferences
          RefSeq - A comprehensive, integrated, non-redundant, well-annotated set of reference sequences including genomic, transcript, and protein.
          Synonyms and Secondary IDs (2)
          Reported As
          Symbol Synonym
          CG11340-RA
          (FlyBase, 1996-)
          pHCl-2-RA
          Secondary FlyBase IDs
            References (2)