FB2026_03 , released September 17, 2026
Transcript: Dmel\f-cup-RD
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General Information
Symbol
Dmel\f-cup-RD
Species
D. melanogaster
Annotation Symbol
CG9611-RD
FlyBase ID
FBtr0112938
Feature type
Associated gene
Evidence Rank
Length (nt)
2532
Evidence Score
Genomic Location
Genomic Maps
cDNA Clones Consistent with the Transcript ( 21 )
cDNA Clones, Fully Sequenced
Exact Match
    Contained within the annotated transcript, internally consistent
      End(s) extend beyond the annotated transcript, internally consistent
      cDNA Clones, End Sequence Only (ESTs)
      End(s) extend beyond the annotated transcript, internally consistent
        Sequence
        CTCAGTCAGCAAATTTGGGCAATTTTTGGAAGCCTTAGTAAAAATTAAAAAAAAAATTCTTTAGTTCTAAAATTGATTTC
        GCTATCAACCGACCGCAAAGAAGTCGCGCATAAAACTCTTGAAGACACCGGCTGCCATTGCGTGGATAATCCAAGGAAGC
        CGAGGCAGAAGCCAAACGATAGACAAAGGGATCCCCAACGAGATGATGAATGCCCAAGCGACTGTACGACATTAACGAGG
        CGGATGCGGACAGCAAGGCCGTAAATCTAGAGCAGCTAACGATTAAAGAGGAGGATGCCTGGTGGAACCAAGTGCCATTG
        AACAACCTGGACCTGAGCTCAAACACCTTAACGCACATATCGCCAAAGATCGAGAATCTGCAATCACTTACCGTGCTTAC
        GCTGCACGATAATGCTTTGGTGGAGTTACCACCGGAGATCGGCAAGCTGGAAAAGCTAGTGCGCCTTAATGTGAGCCACA
        ACAAACTCAGCCAGCTGCCGCGTGCGATGTACAGTCTACCGGAGCTGCGGCACCTCAACATCTCGTACAACGAGTTCGTC
        GAACTTAATCCGGACATCAGTGACCTTCACATGCTTGAGTTTTTGGACGGTGGGCATAACAATATTCAATCCCTGCCCGG
        TGGCATTGGGTTCCTGGTGCGTCTAACTGCGCTCTTGTTGCCCTATAATCACATCAAGGAACTGCCGCCCGATCTTGTTA
        ACATGCGCTCTTTGCAAAAGATTGATCTGATGCATAATGATCTGACCAGCTTGCCGGAGGATATGGGCCTTTTGAGAAAG
        CTGGATTGCCTTTATCTGCAGCATAACGACATACTGGAACTGCCCGAGTTCGAGGGAAACGAGGCCTTGAACGAGCTACA
        TGCCAGCAATAATTTCATCAAGATCATACCAAAAGCTATGTGTAGTAACTTGCCACACCTGAAGATACTGGATTTGCGGG
        ACAATAAGATCACGGAGCTGCCCGACGAGCTGTGCCTGCTGCGCAATCTAAACCGTCTCGATGTGTCCAATAATACGATC
        AGCGTGCTGCCAGTCACATTGTCCTCCTTGGCTCATCTGATTAGCCTGCAGGTGGAGGGAAATCCCATAAAGACAATCAG
        ACGCGACATCCTACAGTGTGGAACAACGAGGATCTTAAAGACTCTGCACGATAGAGCTGTGGCGAAGGCCAAGGAGGAGG
        GAGGTGGCGTCGACGACGCTTCCACGTCAGCGGGCATCAGTGTTACCCGTTTGCGTGGTGGCCAAATGGACGATGGTGAT
        ATACCCGGAAACTTTCCGGATAGCTTTCACCACCAGCAACAGCAGAACGGATTCCAATGTCCTTGTTCATATCCATGTCA
        GCAGCAGCAAATGCAGCAGCAGTTTTGTGTGTATGAGCCGCTCAGAAACTGTCAGGAATATGATCGCCAGACCCAAGGGC
        GCATATATGAGCCCGAAAACTACCAACAGCAACATCAGAATGGCAGCTTGAGATCACTTTTTGTGCAACAGCAGCAGCAG
        CGAATGGAGTATCCCTATCCAGGATACTTTATGTACCAACAGCAGCAGCAACAGCAGTTCTCCTATGAGCAAGATCCATC
        CTCTCGCTCAGCTGTCCATCCACGTTGGGTGTAATACAAACTACGACATACACGTACATTAGCTGTCAATCTGGAGGAGC
        TCACGTCAGTGCCTGACCAGGTGTTCCAGATCGCCAGGGATGAGGGTGTGCATGTGGTGGACTTTGCGCGCAACCAGCTG
        AGCACTTTGCCCAATGGACTGCAGCACATGAAAGATTTAGTTACGGAACTAGTTTTATCCAACAATGTCATCGGCTATGT
        GCCACAGTTCATCTCCCAGTTTACACGTATATCTTTCTTGAATTTGTCCAACAATCTGTTGAATGACCTGCCCACGGAGT
        TTGGTGTCTTGAATACACTGCGTGAACTAAACATTGCAAACAATCGCTTTCCGTGTATTCCCAACTGTGTGTACGAGCTG
        CAAGGCCTGGAGATCCTCATTGCCAGTGAGAACCACATAAAAATGTTAAATGTATCGGGTCTGCAGAACATGCGACGTTT
        GAGCACATTGGATTTGCGCAATAACGACATCGAGACAGTGCCACCAATTTTGGGGAACCTGACAAACATAACTCACTTGG
        AGCTGGTGGGCAATCCATTTCGACAGCCCCGCCACCAAATCCTGATGAAGGGCACTGACGCCATCATGTCGTATTTGCGC
        GATCGCATACCCACATAGAAGAGCAATTCACACCGTTTTTTGAGAAACACTTCACTAGCAATATGTTTATTTTGAGGAAT
        AGCGTAATGGAAATTGATAGATCCGCTCGACCATGCCCACAAACAATCAATCTATGGATTGGCTGTTTGTGGACATGGAT
        GAGGGGTGGCGTTACAAGTACAACATACGACACACACCGTGCATCAACCAACCAAACTAGTCTGCATGCCACAATACCTA
        ATGCACGTTGTTAATCCTGGCTGAGTATCTGCAATAAATGGGAATAGTAGGG
        
        Other Products of this Gene
        Other Transcripts
        Name
        FlyBase ID
        Length (nt)
        FBtr0082846
        2558
        FBtr0082847
        2470
        FBtr0112937
        3407
        FBtr0112939
        2219
        FBtr0334526
        2885
        FBtr0334527
        2797
        FBtr0334528
        2795
        FBtr0334529
        3319
        Polypeptides
        Derived from THIS transcript
        Name
        FlyBase ID
        Length (aa)
        FBpp0111851
        474
        Derived from OTHER transcripts
        Name
        FlyBase ID
        Length (aa)
        FBpp0082311
        693
        FBpp0082312
        650
        FBpp0111850
        522
        FBpp0111852
        620
        FBpp0306593
        802
        FBpp0306594
        759
        FBpp0306595
        571
        FBpp0306596
        522
        Comments

        ATG split between two exons.

        Transcript terminates at site supported by polyadenylated cDNA.

        Evidence supports alternative splice leading to premature stop codon and/or downstream start; may or may not produce functional polypeptide.

        software_exception: start codon spans intron

        software_exception: stop codon spans intron

        External Crossreferences and Linkouts ( 1 )
        Crossreferences
        RefSeq - A comprehensive, integrated, non-redundant, well-annotated set of reference sequences including genomic, transcript, and protein.
        Synonyms and Secondary IDs (2)
        Reported As
        Symbol Synonym
        CG9611-RD
        f-cup-RD
        Secondary FlyBase IDs
          References (0)