FB2026_02 , released June 18, 2026
Transcript: Dmel\f-cup-RA
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General Information
Symbol
Dmel\f-cup-RA
Species
D. melanogaster
Annotation Symbol
CG9611-RA
FlyBase ID
FBtr0082846
Feature type
mRNA
Associated gene
Dmel\f-cup
Evidence Rank
Length (nt)
2558
Evidence Score
Genomic Location
Genomic Maps
cDNA Clones Consistent with the Transcript ( 24 )
cDNA Clones, Fully Sequenced
Exact Match
    Contained within the annotated transcript, internally consistent
      End(s) extend beyond the annotated transcript, internally consistent
        cDNA Clones, End Sequence Only (ESTs)
        Contained within the annotated transcript, internally consistent
        End(s) extend beyond the annotated transcript, internally consistent
          Sequence
          Sequence Downloader
          CTCAGTCAGCAAATTTGGGCAATTTTTGGAAGCCTTAGTAAAAATTAAAAAAAAAATTCTTTAGTTCTAAAATTGATTTC
GCTATCAACCGACCGCAAAGAAGTCGCGCATAAAACTCTTGAAGACACCGGCTGCCATTGCGTGGATAATCCAAGGAAGC
CGAGGCAGAAGCCAAACGATAGACAAAGGGATCCCCAACGAGATGATGAACTTAAGCAACGTAGAACTTGGCTCATTCCG
CGGTGCCCAGGAATGTGACCAGGCATCCGCATTTGGCGGCGACTTCGACTTTGGCCATTCCTGCTTCACCCACTACGGCT
GTCCAAGCGACATGAGTGACAAAACCGGCCGAGGACGGAGTAACCCCTCCACCAGCCGGATTCCTCGCAGCGCACAAAGT
CCGCGCCAAGCCTCAGTGGTCCACTCGCCCAGGACAAACTGTGCCTTTCGCCCGATTTTTCACGAGAGGAGCACTCACGA
GGACGACCAGGTGCTCACCCAAGAACTATGGAAGCTGGCGCGTAAATCGGGCACCCTGAATCTTTCCAACAAAGCATTGG
CCAGAGTGCCCAAGCGACTGTACGACATTAACGAGGCGGATGCGGACAGCAAGGCCGTAAATCTAGAGCAGCTAACGATT
AAAGAGGAGGATGCCTGGTGGAACCAAGTGCCATTGAACAACCTGGACCTGAGCTCAAACACCTTAACGCACATATCGCC
AAAGATCGAGAATCTGCAATCACTTACCGTGCTTACGCTGCACGATAATGCTTTGGTGGAGTTACCACCGGAGATCGGCA
AGCTGGAAAAGCTAGTGCGCCTTAATGTGAGCCACAACAAACTCAGCCAGCTGCCGCGTGCGATGTACAGTCTACCGGAG
CTGCGGCACCTCAACATCTCGTACAACGAGTTCGTCGAACTTAATCCGGACATCAGTGACCTTCACATGCTTGAGTTTTT
GGACGGTGGGCATAACAATATTCAATCCCTGCCCGGTGGCATTGGGTTCCTGGTGCGTCTAACTGCGCTCTTGTTGCCCT
ATAATCACATCAAGGAACTGCCGCCCGATCTTGTTAACATGCGCTCTTTGCAAAAGATTGATCTGATGCATAATGATCTG
ACCAGCTTGCCGGAGGATATGGGCCTTTTGAGAAAGCTGGATTGCCTTTATCTGCAGCATAACGACATACTGGAACTGCC
CGAGTTCGAGGGAAACGAGGCCTTGAACGAGCTACATGCCAGCAATAATTTCATCAAGATCATACCAAAAGCTATGTGTA
GTAACTTGCCACACCTGAAGATACTGGATTTGCGGGACAATAAGATCACGGAGCTGCCCGACGAGCTGTGCCTGCTGCGC
AATCTAAACCGTCTCGATGTGTCCAATAATACGATCAGCGTGCTGCCAGTCACATTGTCCTCCTTGGCTCATCTGATTAG
CCTGCAGGTGGAGGGAAATCCCATAAAGACAATCAGACGCGACATCCTACAGTGTGGAACAACGAGGATCTTAAAGACTC
TGCACGATAGAGCTGTGGCGAAGGCCAAGGAGGAGGGAGGTGGCGTCGACGACGCTTCCACGTCAGCGGGCATCAGTGTT
ACCCGTTTGCGTGGTGGCCAAATGGACGATGGTGATATACCCGGAAACTTTCCGGATAGATACAAACTACGACATACACG
TACATTAGCTGTCAATCTGGAGGAGCTCACGTCAGTGCCTGACCAGGTGTTCCAGATCGCCAGGGATGAGGGTGTGCATG
TGGTGGACTTTGCGCGCAACCAGCTGAGCACTTTGCCCAATGGACTGCAGCACATGAAAGATTTAGTTACGGAACTAGTT
TTATCCAACAATGTCATCGGCTATGTGCCACAGTTCATCTCCCAGTTTACACGTATATCTTTCTTGAATTTGTCCAACAA
TCTGTTGAATGACCTGCCCACGGAGTTTGGTGTCTTGAATACACTGCGTGAACTAAACATTGCAAACAATCGCTTTCCGT
GTATTCCCAACTGTGTGTACGAGCTGCAAGGCCTGGAGATCCTCATTGCCAGTGAGAACCACATAAAAATGTTAAATGTA
TCGGGTCTGCAGAACATGCGACGTTTGAGCACATTGGATTTGCGCAATAACGACATCGAGACAGTGCCACCAATTTTGGG
GAACCTGACAAACATAACTCACTTGGAGCTGGTGGGCAATCCATTTCGACAGCCCCGCCACCAAATCCTGATGAAGGGCA
CTGACGCCATCATGTCGTATTTGCGCGATCGCATACCCACATAGAAGAGCAATTCACACCGTTTTTTGAGAAACACTTCA
CTAGCAATATGTTTATTTTGAGGAATAGCGTAATGGAAATTGATAGATCCGCTCGACCATGCCCACAAACAATCAATCTA
TGGATTGGCTGTTTGTGGACATGGATGAGGGGTGGCGTTACAAGTACAACATACGACACACACCGTGCATCAACCAACCA
AACTAGTCTGCATGCCACAATACCTAATGCACGTTGTTAATCCTGGCTGAGTATCTGCAATAAATGGGAATAGTAGGG
          Other Products of this Gene
          Other Transcripts
          Name
          FlyBase ID
          Length (nt)
          f-cup-RB
          FBtr0082847
          2470
          f-cup-RC
          FBtr0112937
          3407
          f-cup-RD
          FBtr0112938
          2532
          f-cup-RE
          FBtr0112939
          2219
          f-cup-RF
          FBtr0334526
          2885
          f-cup-RG
          FBtr0334527
          2797
          f-cup-RH
          FBtr0334528
          2795
          f-cup-RI
          FBtr0334529
          3319
          Polypeptides
          Derived from THIS transcript
          Name
          FlyBase ID
          Length (aa)
          f-cup-PA
          FBpp0082311
          693
          Derived from OTHER transcripts
          Name
          FlyBase ID
          Length (aa)
          f-cup-PB
          FBpp0082312
          650
          f-cup-PC
          FBpp0111850
          522
          f-cup-PD
          FBpp0111851
          474
          f-cup-PE
          FBpp0111852
          620
          f-cup-PF
          FBpp0306593
          802
          f-cup-PG
          FBpp0306594
          759
          f-cup-PH
          FBpp0306595
          571
          f-cup-PI
          FBpp0306596
          522
          Comments

          Transcript terminates at site supported by polyadenylated cDNA.

          External Crossreferences and Linkouts ( 1 )
          Crossreferences
          RefSeq - A comprehensive, integrated, non-redundant, well-annotated set of reference sequences including genomic, transcript, and protein.
          Synonyms and Secondary IDs (2)
          Reported As
          Symbol Synonym
          CG9611-RA
          (FlyBase, 1996-)
          f-cup-RA
          Secondary FlyBase IDs
            References (2)