FB2026_02 , released June 18, 2026
Transcript: Dmel\sqd-RE
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General Information
Symbol
Dmel\sqd-RE
Species
D. melanogaster
Annotation Symbol
CG16901-RE
FlyBase ID
FBtr0309094
Feature type
mRNA
Associated gene
Dmel\sqd
Evidence Rank
Length (nt)
2844
Evidence Score
Genomic Location
Genomic Maps
cDNA Clones Consistent with the Transcript ( 347 )
cDNA Clones, Fully Sequenced
Exact Match
    Contained within the annotated transcript, internally consistent
    End(s) extend beyond the annotated transcript, internally consistent
      cDNA Clones, End Sequence Only (ESTs)
      Contained within the annotated transcript, internally consistent
      End(s) extend beyond the annotated transcript, internally consistent
        Sequence
        Sequence Downloader
        ATAAATCAAAGCTGCCATACTGCAAGCAGACAAGTCACGCGCCCATTTAGCTCCTTATATAGGCTTATTTGGGGTGGTAT
CGTACAGAAAATCCCAATTTAATCCTTGGCAAATGTATAGCTAACAATCTCCAGGTAGAGCAAGCAAATACAATACAAAT
ATTTACCAAAATAATACCAAATCGACTTGACTGGGAAAACATCAAGGTGGCAACGCCGCACCCATATACACACGCTGTCG
TTTGCATTTATCATTTTCCGGTCGTCATTTCATTCGTACGCGCGACTTTTTGGCGAGTGTGTATAAAAATCTCCGGCTCT
GCGTAAAAAACGAATATCGTGCTGCCTAGCCCCCGAAATTAGTAGATCAGTCGAAAACACACAAAATGGCCGAGAACAAG
CAAGTGGATACAGAAATAAACGGCGAGGATTTCACCAAGGACGTGACTGCCGACGGTCCGGGATCTGAAAATGGTGATGC
GGGCGCCGCCGGCTCGACCAACGGCAGTTCGGACAACCAATCGGCCGCATCCGGCCAGCGGGACGACGACAGGAAACTGT
TTGTCGGTGGTCTGAGCTGGGAAACGACTGAGAAGGAACTCCGCGATCACTTCGGCAAATATGGCGAGATCGAGAGCATC
AATGTCAAGACAGATCCCCAGACCGGTCGGTCCCGAGGATTCGCCTTCATCGTGTTTACAAACACCGAGGCCATTGACAA
AGTCAGCGCCGCGGATGAGCACATAATCAACAGCAAGAAGGTCGATCCCAAGAAGGCCAAGGCCAGGCACGGCAAGATCT
TTGTCGGCGGCCTCACCACAGAGATCAGCGATGAGGAGATTAAGACCTACTTTGGACAGTTCGGCAATATCGTCGAGGTG
GAGATGCCATTCGACAAGCAAAAGTCGCAGCGCAAAGGATTCTGCTTCATCACCTTCGATTCGGAGCAGGTGGTGACAGA
TTTGCTGAAGACGCCCAAGCAGAAGATCGCCGGCAAGGAGGTCGATGTTAAGCGTGCGACGCCCAAGCCGGAGAACCAGA
TGATGGGCGGTATGCGTGGTGGACCACGCGGTGGTATGCGCGGCGGACGCGGTGGCTACGGAGGACGAGGTGGCTACAAC
AACCAGTGGGACGGACAGGGATCATACGGCGGCTATGGCGGCGGCTACGGCGGATATGGTGCCGGTGGTTATGGCGACTA
CTATGCCGGCGGCTACTATAATGGATATGACTACGGTTATGGCGGTGGCGGTTTTAACGGTGGCAAGCAGCGCGGAGGCG
GTGGACGCCAGCAGCGGCATCAGCCCTACTAAAAAGTGGGCAGGGGGCGTGGGCATTGGGTATCTCGCATTCTCCGGATA
ACTGCAAACTATTTGAATTTTACCTAGTTTAGTTTGTTATGCATTACTACAAGAAGCAACACACATCTCTGCAACAACAC
CATCTGGGTAACCGCATATATACATACGCCGTTGTATATATCTGTATGAAAGAAATGAGGAAAAAAGGAAATGAATAGAC
TGGCTGGCTGGGAGCAATAATATCAACATCAGCAACCTTAACACACCTTTACACACTTGATGTGTAGCACCATTCCAACA
ACAGCATCATACGCAGCTAAAAAACATCATTTATACAATACAAGGCAAACCACAAAGCAAAACAAGAAAAAAAAAAAACA
ACACAAATAGATACACACACATAGTTAGGCATACACATGTAATTTTTCAGCAAGTGGCTAATTTTTCATAGCCACACGCT
CATTAAGCCGACAAACCAACCAACCAAACAACCAACCAACCGCCCACCAAACAACCCTTCAACCCGTGCAAAACCACAAG
ACAACATTGCAGGGAAACGTGGCAAACAACATTTGCCAAACTAACTGCTGTGCAATGCTCACGTTGTCTGTGTGTCGAAA
CTAATTTGTTTTTCTAATGTAGTCCCATACATTATGCGAGGTAATTGTTTAACGCGTCAGTAGAGCACAGGATGTCGGAG
AGATAGGAAAGATAGGAAAAAAAAACAGAAGAAATCAAACAAAAATACTTACAAAACAAAACAAAAAATACAGCTAAAAT
GTTTCATATATTACACAATACAATAGAGTATAAGTATTTGTTTAACTTTAATTATGAATTAACTGTAATATGTAATAATA
ATTATAGAACCAACAAACAAAAGAAGCAAGCATTGACTGGCTGGCACATCGGGTTGCCTTCTTCCCGTTCGATTGAGAAA
AACTATATACGATATTCGATATACGATATACGACAAGACACAGGACAAGACAACAAAGCAGAAACAACCTACAACAAACA
AACCACCATATTACATAATATACTAGTACAGAGCAGAGAAAGCGGAAACGATATTAGTTTTTGTTTTCCGGATATGTGTA
TTACGCTCATAGACTACATATATACATACATAATACATAATACATCTATATTTATGTACACTTCTGAAAGGGAAGAGATT
TATATTTTAATAAAAATCTAAAGTCACACTCTCTACGTACACACCCACAATTGTATAGACCACTGCAAGAATGCGAATTG
TTAAATCAAATCTATCTATGTATACACTACTATAGCTATATGAAAATCTTTATGAAATCGTCCGACCGTCAAGCTGAATG
GATGGCATTAATATATGTAAATGCCGATGTGTGCTGGACGGGCAGTTTAGGTAGCATTTCGAGGAAATCAATACATGGAA
GCGTGGATTTTCCCCCTTAAAAAAAAAAAGAAATTAAACATTCTCAAGCGAAATTACAACCTAACTTAATTGAATGATAG
GAGATCAGTTTTAAAGCGAACATTACATTAAAGAAACCTAAATT
        Other Products of this Gene
        Other Transcripts
        Name
        FlyBase ID
        Length (nt)
        sqd-RA
        FBtr0082854
        5551
        sqd-RB
        FBtr0082855
        2115
        sqd-RC
        FBtr0082856
        2239
        sqd-RD
        FBtr0082857
        1983
        Polypeptides
        Derived from THIS transcript
        Name
        FlyBase ID
        Length (aa)
        sqd-PE
        FBpp0301102
        308
        Derived from OTHER transcripts
        Name
        FlyBase ID
        Length (aa)
        sqd-PA
        FBpp0082319
        321
        sqd-PB
        FBpp0082320
        344
        sqd-PC
        FBpp0082321
        308
        sqd-PD
        FBpp0089309
        178
        Comments

        Extended 3' UTR based on EST and RNA-Seq data.

        Extended 3' UTR based on RNA-Seq and/or EST data.

        External Crossreferences and Linkouts ( 1 )
        Crossreferences
        RefSeq - A comprehensive, integrated, non-redundant, well-annotated set of reference sequences including genomic, transcript, and protein.
        Synonyms and Secondary IDs (1)
        Reported As
        Symbol Synonym
        sqd-RE
        Secondary FlyBase IDs
          References (0)