FB2026_03 , released September 17, 2026
Transcript: Dmel\sqd-RC
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General Information
Symbol
Dmel\sqd-RC
Species
D. melanogaster
Annotation Symbol
CG16901-RC
FlyBase ID
FBtr0082856
Feature type
mRNA
Associated gene
Dmel\sqd
Evidence Rank
Length (nt)
2239
Evidence Score
Genomic Location
Genomic Maps
cDNA Clones Consistent with the Transcript ( 347 )
cDNA Clones, Fully Sequenced
Exact Match
    Contained within the annotated transcript, internally consistent
    End(s) extend beyond the annotated transcript, internally consistent
      cDNA Clones, End Sequence Only (ESTs)
      Contained within the annotated transcript, internally consistent
      End(s) extend beyond the annotated transcript, internally consistent
      Sequence
      Sequence Downloader
      GTACGCGCGACTTTTTGGCGAGTGTGTATAAAAATCTCCGGCTCTGCGTAAAAAACGAATATCGTGCTGCCTAGCCCCCG
AAATTAGTAGATCAGTCGAAAACACACAAAATGGCCGAGAACAAGCAAGTGGATACAGAAATAAACGGCGAGGATTTCAC
CAAGGACGTGACTGCCGACGGTCCGGGATCTGAAAATGGTGATGCGGGCGCCGCCGGCTCGACCAACGGCAGTTCGGACA
ACCAATCGGCCGCATCCGGCCAGCGGGACGACGACAGGAAACTGTTTGTCGGTGGTCTGAGCTGGGAAACGACTGAGAAG
GAACTCCGCGATCACTTCGGCAAATATGGCGAGATCGAGAGCATCAATGTCAAGACAGATCCCCAGACCGGTCGGTCCCG
AGGATTCGCCTTCATCGTGTTTACAAACACCGAGGCCATTGACAAAGTCAGCGCCGCGGATGAGCACATAATCAACAGCA
AGAAGGTCGATCCCAAGAAGGCCAAGGCCAGGCACGGCAAGATCTTTGTCGGCGGCCTCACCACAGAGATCAGCGATGAG
GAGATTAAGACCTACTTTGGACAGTTCGGCAATATCGTCGAGGTGGAGATGCCATTCGACAAGCAAAAGTCGCAGCGCAA
AGGATTCTGCTTCATCACCTTCGATTCGGAGCAGGTGGTGACAGATTTGCTGAAGACGCCCAAGCAGAAGATCGCCGGCA
AGGAGGTCGATGTTAAGCGTGCGACGCCCAAGCCGGAGAACCAGATGATGGGCGGTATGCGTGGTGGACCACGCGGTGGT
ATGCGCGGCGGACGCGGTGGCTACGGAGGACGAGGTGGCTACAACAACCAGTGGGACGGACAGGGATCATACGGCGGCTA
TGGCGGCGGCTACGGCGGATATGGTGCCGGTGGTTATGGCGACTACTATGCCGGCGGCTACTATAATGGATATGACTACG
GTTATGGCGGTGGCGGTTTTAACGGTGGCAAGCAGCGCGGAGGCGGTGGACGCCAGCAGCGGCATCAGCCCTACTAAAAA
GTGGGCAGGGGGCGTGGGCATTGGGTATCTCGCATTCTCCGGATAACTGCAAACTATTTGAATTTTACCTAGTTTAGTTT
GTTATGCATTACTACAAGAAGCAACACACATCTCTGCAACAACACCATCTGGGTAACCGCATATATACATACGCCGTTGT
ATATATCTGTATGAAAGAAATGAGGAAAAAAGGAAATGAATAGACTGGCTGGCTGGGAGCAATAATATCAACATCAGCAA
CCTTAACACACCTTTACACACTTGATGTGTAGCACCATTCCAACAACAGCATCATACGCAGCTAAAAAACATCATTTATA
CAATACAAGGCAAACCACAAAGCAAAACAAGAAAAAAAAAAAACAACACAAATAGATACACACACATAGTTAGGCATACA
CATGTAATTTTTCAGCAAGTGGCTAATTTTTCATAGCCACACGCTCATTAAGCCGACAAACCAACCAACCAAACAACCAA
CCAACCGCCCACCAAACAACCCTTCAACCCGTGCAAAACCACAAGACAACATTGCAGGGAAACGTGGCAAACAACATTTG
CCAAACTAACTGCTGTGCAATGCTCACGTTGTCTGTGTGTCGAAACTAATTTGTTTTTCTAATGTAGTCCCATACATTAT
GCGAGGTAATTGTTTAACGCGTCAGTAGAGCACAGGATGTCGGAGAGATAGGAAAGATAGGAAAAAAAAACAGAAGAAAT
CAAACAAAAATACTTACAAAACAAAACAAAAAATACAGCTAAAATGTTTCATATATTACACAATACAATAGAGTATAAGT
ATTTGTTTAACTTTAATTATGAATTAACTGTAATATGTAATAATAATTATAGAACCAACAAACAAAAGAAGCAAGCATTG
ACTGGCTGGCACATCGGGTTGCCTTCTTCCCGTTCGATTGAGAAAAACTATATACGATATTCGATATACGATATACGACA
AGACACAGGACAAGACAACAAAGCAGAAACAACCTACAACAAACAAACCACCATATTACATAATATACTAGTACAGAGCA
GAGAAAGCGGAAACGATATTAGTTTTTGTTTTCCGGATATGTGTATTACGCTCATAGACTACATATATACATACATAATA
CATAATACATCTATATTTATGTACACTTCTGAAAGGGAAGAGATTTATATTTTAATAAAAATCTAAAGTCACACTCTCT
      Other Products of this Gene
      Other Transcripts
      Name
      FlyBase ID
      Length (nt)
      sqd-RA
      FBtr0082854
      5551
      sqd-RB
      FBtr0082855
      2115
      sqd-RD
      FBtr0082857
      1983
      sqd-RE
      FBtr0309094
      2844
      Polypeptides
      Derived from THIS transcript
      Name
      FlyBase ID
      Length (aa)
      sqd-PC
      FBpp0082321
      308
      Derived from OTHER transcripts
      Name
      FlyBase ID
      Length (aa)
      sqd-PA
      FBpp0082319
      321
      sqd-PB
      FBpp0082320
      344
      sqd-PD
      FBpp0089309
      178
      sqd-PE
      FBpp0301102
      308
      Comments

      The 1.7kb and 1.9kb sqd transcripts differ in the

      site of polyadenylation.

      (Kelley, 1993)

      Transcript terminates at site supported by polyadenylated cDNA.

      External Crossreferences and Linkouts ( 1 )
      Crossreferences
      RefSeq - A comprehensive, integrated, non-redundant, well-annotated set of reference sequences including genomic, transcript, and protein.
      Synonyms and Secondary IDs (4)
      Reported As
      Symbol Synonym
      CG16901-RC
      (FlyBase, 1996-)
      sqd-RC
      (FlyBase, 1996-)
      sqd+R1.9
      (FlyBase, 1996-)
      sqdB
      Secondary FlyBase IDs
      • FBtr0000660
      • FBtr0000661
      References (3)