FB2026_01 , released March 12, 2026
FB2026_01 , released March 12, 2026
Transcript: Dmel\pHCl-1-RJ
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General Information
Symbol
Dmel\pHCl-1-RJ
Species
D. melanogaster
Annotation Symbol
CG44099-RJ
FlyBase ID
FBtr0334977
Feature type
mRNA
Associated gene
Dmel\pHCl-1
Evidence Rank
Length (nt)
3277
Evidence Score
Genomic Location
Genomic Maps
cDNA Clones Consistent with the Transcript ( 7 )
cDNA Clones, Fully Sequenced
Exact Match
    Contained within the annotated transcript, internally consistent
      End(s) extend beyond the annotated transcript, internally consistent
        cDNA Clones, End Sequence Only (ESTs)
        Contained within the annotated transcript, internally consistent
        End(s) extend beyond the annotated transcript, internally consistent
          Sequence
          Sequence Downloader
          AGAGACTTTTCGGTGTTCGCCGCGCTTCGTCATCCTGCTTTTCCGCTTTTCCGAATCGAGAATGCGTGCCAAACTGCATG
AAAAGGAAAACTTGGCCACAGCCAGCGGCAAGTGCACATAAGTTGCAACAAGCAAAGTAACAACTACAGCAACAGCAAAA
ACAACGTAACAAAATAGGTAAAACAGTATAAACAACGCAACATTGTAAGCTGGCTGAAAGGCGTTGCCAGATTGTTGGCC
AACAGCAATAGCAACAACCGCACTAGCAACAGCTACAGCAGTACTACAACAACAACAACAACCATAACAATTGCCCAAAG
GGCCAAATGAACGTTGTCGGCTAGTCCGTCTGTCGCCCGCTTGGTGGCGCTAGCTAACTGACTGAGCAACAACAACAACA
CTGCGTGCTGCCGCTGGAAATCCTGTCGCTAATTAGCGAACTGGCGACGTGTGCGCTTATGCAGACACAAGGCGATAGCG
GATTCCATTGAACTGGCTGCCGGTTTAAATTTGTTTTCGTAACATGGGCTGCGTCTTTGAAGCGGCCAAAGAGCAGCCCC
ACAAACCGAGAAGCAGGCAACTGAGGCGCAACCAATGCCGTGGAAAAGCGGAAAAAGCAGCAGCGGGGACCAGAGGCAAG
GTCGCTGTCAGAGGAAACAACGACAAGCCAGCTGAGGACATCAAAATCAAGGATAACTATCAACAAAACCATAAAACGCA
AACCGAAACACAAACAGAAGTAGCAGCAGTAGTAGCAATAGCAACAGACGCAGGAGCAGAAACAGAAACTGAAACAGAGG
CTGAGGCCCAAAAAGAGCCAGCAACCGGGCCCGAACATCTGAAGGCGGCGGCTCAAGTGCTTTTAACGATACGGCAGGCA
CGTCAGGAGAACAACAAGCACAGTAGTAGTCAAGTGGCTGAAACGCACAAGGACGAAGGCGAGGACGCGTTGGCGCGGCA
AGGATCCATTGTCGATACGGCGGCGGGCAGAATCGGAATCGATATTGCGGCAACAACGATTCAAGTCGCCGAGCGGCATG
AGGATGGGCAGCATTGGCAGCAACACAATGTCCGCCGGCGGAGGCGCCAGCCAGATCCTGCAGCGCATCCTGCAAGCATC
ACCAAACTTTCGGCAATATCCCTGCATTTTCACGCCCTCGCCGCCCTAGCGAAAACGCTCCAAAAGCACGAGGACCTGAG
TCCTGTCCAGGATCGCCAGCCCCTAGCGTACCGGGCGTGGCAAGAACATCCGTATGCCGAGACCCAAATGCCCGCCACCA
TGTCAGCGGCCATCATTGCGAATGTCGGCGCTACTGCAGCGGCCACCTCGGCAGCCGCCTTCCAGTATCTCGGCCAGCAC
TACAAGCACTACAGCCAGTCGATCAGCTTCTACGCCGCCTCCAGTGTGCTCCTGATGCTTTGTTATCTGACCACCGCGTC
CACGGCAGCTGCCACGCAGTCGGAGACGGGTGCCCTCGACAAGCATCCCATATTTGATGAGTCCAGTTCGGATAAGGAAA
TATTAGATTTACTGCTTGAGAAGAAGCGCTACGATAAACGATTACTGCCGCCTGTAAATGATGAAGACTTTTGCTGTGGC
TTGCAATCGCCCGATATGGCAACTAATCAAAATGCACGGAGACCACACAATCGCGGCACTCTGACGGTGAACGTGAACGT
GCTGCTCCTGAGCTTAGCATCGCCCGACGAAAGCAGTTTGAAATACGAGGTTGAATTTCTGCTGAACCAGCAATGGAACG
ATCCGCGACTGCAATATGGCAATAAGTCTCATTATGACTTCTTAAATGCTCTGCATCATCATGATAGCATCTGGACGCCG
GATACGTATTTCATTATGCATGGCGATTTCAAGGATCCCATCATACCAATGCATTTCGCTTTAAGAATATTTCGGAACGG
GACCATTACGTACGCAATGAGACGTCACCTGATCTTATCCTGCCAGGGAAGTCTTCATATATTTCCATTCGATGACCCCA
AGTGTTCCTTCTCCATGGAGAGCATTTCCTACGAGGAGGCCCAAATCAAGTACGTCTGGAAAAACGATGAGGACACTCTG
CGGAAGAGTCCTTCGCTGACCACATTGAACGCGTACTTAATCAAGAATCAAACGACGGCCTGCGATCAGAACAGCTGGAG
AGGTAATTACAGTTGCCTACAGGTCGAGTTGACATTTACCCGTGATCGTGCGTATTATTTTACAACCGTTTTCATACCTG
GCATTATATTGGTCACCTCGTCGTTTATCACATTTTGGCTGGAATGGAATGCAGTCCCAGCCCGGGTTATGATCGGCGTG
ACAACAATGCTGAATTTCTTCACTACCTCGAACGGTTTCCGGAGCACTCTGCCGGTTGTTTCTAATCTGACGGCGATGAA
CGTGTGGGACGGCGTGTGTATGTGCTTCATCTACGCCTCCTTGCTGGAATTCGTCTGCGTCAATTATGTGGGGCGAAAGC
GACCCCTGCACAACGTCGTCTATCGGCCCGGCGAGAATCCCGTAACACAGCGTCTTCCAGCAGTACTAAGCAGGATCGGA
GTAATTCTTGCAAGTCCTTTGCCCGGCGAAAAGCGTCAAAACGCCGGGGCACCGAACGAAATTGTGGCATGCACCACCTG
CGGCGGCAGCAACAGTCCGTGCACCCATTCGGCAAATAATGGATGTGCCACGGAGACCTGCTTCGTTCAAGTGCGGAAAA
AGGAGCCACCTCATCCGATTCGAGTGGCCAAGACGATCGATGTCATCGCTAGAATTACATTTCCAACTGCTTATGCCATT
TTTCTGATATTCTTCTTTGTACACTATAAAGGATTTTCGTAAAATTAAGCAAAAAAAACACTACAAGTAAAGCATAAACA
TACATACATATATAGATACTTGAACACGCTAAATTGCCGAAGCAAAGCCAGCAAATTCGTAATGTAATTCGTAGAGAAAC
ATGCAGACCGACATGAGAACTCGTTTGCTAAATTCTAGGGCCTTGCAAAGTCATCTAATTTTAATGGAACAAAGGGAAAC
ACAAAGTACATCTAATTATTCATTAATGATTATTTAAATGGCAACAACATGACAAAACCAGTGATAAAAACGTCAAAATG
AAAACATTAGTTTAAACTGAGTTGTTAATGGGGAAAAAAGAAAAATGAATAAGTTGTTAATAATTAATATTTACGAAAGT
TAAATTTATGCAAATGAGCAAACATACGAATGAAACATTTTCGACTGCCTTTTTTAAAAATAGTAGACAAACAAACC
          Other Products of this Gene
          Other Transcripts
          Name
          FlyBase ID
          Length (nt)
          pHCl-1-RC
          FBtr0334972
          3361
          pHCl-1-RD
          FBtr0334973
          3164
          pHCl-1-RE
          FBtr0334974
          3239
          pHCl-1-RF
          FBtr0334975
          3293
          pHCl-1-RG
          FBtr0334976
          3687
          pHCl-1-RH
          FBtr0334971
          3247
          pHCl-1-RI
          FBtr0334970
          3223
          pHCl-1-RK
          FBtr0334978
          3199
          pHCl-1-RL
          FBtr0334979
          5941
          pHCl-1-RM
          FBtr0334980
          3818
          pHCl-1-RN
          FBtr0334981
          6629
          pHCl-1-RO
          FBtr0334982
          3743
          pHCl-1-RP
          FBtr0334983
          3218
          pHCl-1-RS
          FBtr0474160
          3277
          pHCl-1-RT
          FBtr0474161
          3271
          pHCl-1-RU
          FBtr0474162
          3226
          Polypeptides
          Derived from THIS transcript
          Name
          FlyBase ID
          Length (aa)
          pHCl-1-PJ
          FBpp0306990
          772
          Derived from OTHER transcripts
          Name
          FlyBase ID
          Length (aa)
          pHCl-1-PC
          FBpp0306985
          637
          pHCl-1-PD
          FBpp0306986
          737
          pHCl-1-PE
          FBpp0306987
          762
          pHCl-1-PF
          FBpp0306988
          779
          pHCl-1-PG
          FBpp0306989
          681
          pHCl-1-PH
          FBpp0306984
          762
          pHCl-1-PI
          FBpp0306983
          754
          pHCl-1-PK
          FBpp0306991
          746
          pHCl-1-PL
          FBpp0306992
          747
          pHCl-1-PM
          FBpp0306993
          954
          pHCl-1-PN
          FBpp0306994
          978
          pHCl-1-PO
          FBpp0306995
          929
          pHCl-1-PP
          FBpp0306996
          754
          pHCl-1-PS
          FBpp0423159
          774
          pHCl-1-PT
          FBpp0423160
          770
          pHCl-1-PU
          FBpp0423161
          755
          Comments

          Transcript terminates at site supported by polyadenylated cDNA.

          External Crossreferences and Linkouts ( 1 )
          Crossreferences
          RefSeq - A comprehensive, integrated, non-redundant, well-annotated set of reference sequences including genomic, transcript, and protein.
          Synonyms and Secondary IDs (3)
          Reported As
          Symbol Synonym
          CG44099-RJ
          pHCl-1-RJ
          pHCl-RJ
          Secondary FlyBase IDs
            References (0)