FB2026_02 , released June 18, 2026
Transcript: Dmel\pHCl-1-RN
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General Information
Symbol
Dmel\pHCl-1-RN
Species
D. melanogaster
Annotation Symbol
CG44099-RN
FlyBase ID
FBtr0334981
Feature type
mRNA
Associated gene
Dmel\pHCl-1
Evidence Rank
Length (nt)
6629
Evidence Score
Genomic Location
Genomic Maps
cDNA Clones Consistent with the Transcript ( 6 )
cDNA Clones, Fully Sequenced
Exact Match
    Contained within the annotated transcript, internally consistent
      End(s) extend beyond the annotated transcript, internally consistent
        cDNA Clones, End Sequence Only (ESTs)
        Contained within the annotated transcript, internally consistent
        End(s) extend beyond the annotated transcript, internally consistent
          Sequence
          Sequence Downloader
          AGTTCGGGTCGGGTTTGCAATTCAACAGCACTGCGGAAGCGGAGAAAACTCGTCACCAAAGCGGACGGGCCAAACAATAA
GCCAGCGTAGCCACAGCCAGCGGCAAGTGCACATAAGTTGCAACAAGCAAAGTAACAACTACAGCAACAGCAAAAACAAC
GTAACAAAATAGGTAAAACAGTATAAACAACGCAACATTGTAAGCTGGCTGAAAGGCGTTGCCAGATTGTTGGCCAACAG
CAATAGCAACAACCGCACTAGCAACAGCTACAGCAGTACTACAACAACAACAACAACCATAACAATTGCCCAAAGGGCCA
AATGAACGTTGTCGGCTAGTCCGTCTGTCGCCCGCTTGGTGGCGCTAGCTAACTGACTGAGCAACAACAACAACACTGCG
TGCTGCCGCTGGAAATCCTGTCGCTAATTAGCGAACTGGCGACGTGTGCGCTTATGCAGACACAAGGCGATAGCGGATTC
CATTGAACTGGCTGCCGGTTTAAATTTGTTTTCGTAACATGGGCTGCGTCTTTGAAGCGGCCAAAGAGCAGCCCCACAAA
CCGAGAAGCAGGCAACTGAGGCGCAACCAATGCCGTGGAAAAGCGGAAAAAGCAGCAGCGGGGACCAGAGGCAAGGTCGC
TGTCAGAGGAAACAACGACAAGCCAGCTGAGGACATCAAAATCAAGGATAACTATCAACAAAACCATAAAACGCAAACCG
AAACACAAACAGAAGTAGCAGCAGTAGTAGCAATAGCAACAGACGCAGGAGCAGAAACAGAAACTGAAACAGAGGCTGAG
GCCCAAAAAGAGCCAGCAACCGGGCCCGAACATCTGAAGGCGGCGGCTCAAGTGCTTTTAACGATACGGCAGGCACGTCA
GGAGAACAACAAGCACAGTAGTAGTCAAGTGGCTGAAACGCACAAGGACGAAGGCGAGGACGCGTTGGCGCGGCAAGGAT
CCATTGTCGATACGGCGGCGGGCAGAATCGGAATCGATATTGCGGCAACAACGATTCAAGTCGCCGAGCGGCATGAGGAT
GGGCAGCATTGGCAGCAACACAATGTCCGCCGGCGGAGGCGCCAGCCAGATCCTGCAGCGCATCCTGCAAGCATCACCAA
ACTTTCGGCAATATCCCTGCATTTTCACGCCCTCGCCGCCCTAGCGAAAACGCTCCAAAAGCACGAGGACCTGAGTCCTG
TCCAGGATCGCCAGCCCCTAGCGTACCGGGCGTGGCAAGAACATCCGTATGCCGAGACCCAAATGCCCGCCACCATGTCA
GCGGCCATCATTGCGAATGTCGGCGCTACTGCAGCGGCCACCTCGGCAGCCGCCTTCCAGTATCTCGGCCAGCACTACAA
GCACTACAGCCAGTCGATCAGCTTCTACGCCGCCTCCAGTGTGCTCCTGATGCTTTGTTATCTGACCACCGCGTCCACGG
CAGCTGCCACGCAGTCGGAGACGGGTGCCCTCGACAAGCATCCCATTCATGGCATCGATTGGTCGAAATTTGATGAGTCC
AGTTCGGATAAGGAAATATTAGATTTACTGCTTGAGAAGAAGCGCTACGATAAACGATTACTGCCGCCTGTAAATGATGA
AGACTTTTGCTGTGGCTTGCAATCGCCCGATATGGCAACTAATCAAAATGCACGGAGACCACACAATCGCGGCACTCTGA
CGGTGAACGTGAACGTGCTGCTCCTGAGCTTAGCATCGCCCGACGAAAGCAGTTTGAAATACGAGGTTGAATTTCTGCTG
AACCAGCAATGGAACGATCCGCGACTGCAATATGGCAATAAGTCTCATTATGACTTCTTAAATGCTCTGCATCATCATGA
TAGCATCTGGACGCCGGATACGTATTTCATTATGCATGGCGATTTCAAGGATCCCATCATACCAATGCATTTCGCTTTAA
GAATATTTCGGAACGGGACCATTACGTACGCAATGAGACGTCACCTGATCTTATCCTGCCAGGGAAGTCTTCATATATTT
CCATTCGATGACCCCAAGTGTTCCTTCTCCATGGAGAGCATTTCCTACGAGGAGGCCCAAATCAAGTACGTCTGGAAAAA
CGATGAGGACACTCTGCGGAAGAGTCCTTCGCTGACCACATTGAACGCGTACTTAATCAAGAATCAAACGACGGCCTGCG
ATCAGAACAGCTGGAGAGGTAATTACAGTTGCCTACAGGTCGAGTTGACATTTACCCGTGATCGTGCGTATTATTTTACA
ACCGTTTTCATACCTGGCATTATATTGGTCACCTCGTCGTTTATCACATTTTGGCTGGAATGGAATGCAGTCCCAGCCCG
GGTTATGATCGGCGTGACAACAATGCTGAATTTCTTCACTACCTCGAACGGTTTCCGGAGCACTCTGCCGGTTGTTTCTA
ATCTGACGGCGATGAACGTGTGGGACGGCGTGTGTATGTGCTTCATCTACGCCTCCTTGCTGGAATTCGTCTGCGTCAAT
TATGTGGGGCGAAAGCGACCCCTGCACAACGTCGTCTATCGGCCCGGCGAGAATCCCGTAACACAGCGTCTTCCAGCAGT
ACTAAGCAGGATCGGAGTAATTCTTGCAAGTCCTTTGGCAAGCGCCGCTGCCACGCCGGCCATGTCGATGATGGGCGGGG
CCACGCCCATGTCCAGTGGTACCCCGGCCGCCTCATCCTCGGTGGCCACGCCCGGTACCCCAAGGATCACCGATCCGGAG
GAGTTCTTCGGCGGCGGCATGCGTTGGCAGGAGGCCCATGGCGGAATCATTGGAGCTGCTGTCCAGAATTTACGGGCACG
TTCGATAAAACGTAAGGCGGCCAGAAGTCCATCCACTTCCATATCGCCCCATCCCAGTGGGCGACCCACTGAGCATATCT
ACGAAGAGCCCGGTGGATCCACATCCGGTGTCACAAGTACGAAAGTAAAGTTCAAGGACGAGCTGAAGGAGGAGCAACCG
GAGGAGGCGGAGTCCAGCACCAAACTACGACGATCGGTGGCCACCAGTACACCGGCTTTGGTTGTAAGGATCGAGGCTGA
GATCGATCCGGAGGCGGAAGACAAGCCCATCCAGGATATGGAAATGACAGAACGTCAGTTGTCCTTGCCGTTGAAACCGC
CGCGTCGCAAGGCATCGCGCTCCAATTCACCAGCCTCGGTTTACAGCGATGCATTCGAGAATGTGGAAGCTACACCCGGC
GAAAAGCGTCAAAACGCCGGGGCACCGAACGAAATTGTGGCATGCACCACCTGCGGCGGCAGCAACAGTCCGTGCACCCA
TTCGGCAAATAATGGATGTGCCACGGAGACCTGCTTCGTTCAAGTGCGGAAAAAGGAGCCACCTCATCCGATTCGAGTGG
CCAAGACGATCGATGTCATCGCTAGAATTACATTTCCAACTGCTTATGCCATTTTTCTGATATTCTTCTTTGTACACTAT
AAAGGATTTTCGTAAAATTAAGCAAAAAAAACACTACAAGTAAAGCATAAACATACATACATATATAGATACTTGAACAC
GCTAAATTGCCGAAGCAAAGCCAGCAAATTCGTAATGTAATTCGTAGAGAAACATGCAGACCGACATGAGAACTCGTTTG
CTAAATTCTAGGGCCTTGCAAAGTCATCTAATTTTAATGGAACAAAGGGAAACACAAAGTACATCTAATTATTCATTAAT
GATTATTTAAATGGCAACAACATGACAAAACCAGTGATAAAAACGTCAAAATGAAAACATTAGTTTAAACTGAGTTGTTA
ATGGGGAAAAAAGAAAAATGAATAAGTTGTTAATAATTAATATTTACGAAAGTTAAATTTATGCAAATGAGCAAACATAC
GAATGAAACATTTTCGACTGCCTTTTTTAAAAATAGTAGACAAACAAACCAAAAAAGCAACAAAAAAAGAACTTTAAATT
AAATTTGCAAATTTTTGCATATGCTCGAAAATGCATTAGTTAATTATACCAACCAAAGAAACACTGTCTAGCAATTGTAA
TATATAATATTTAAACAATTTAATAAGCAAACAAATTAATGCTGAAAGTACCAAAAAAGAACACGATCCAAGAAGATAAA
AAGACCTAGCCTATAACTATGAAATATGAAACGCAAACCAAACAGCTTTAAGGCTTTACCTATTTGAGTAGTCGAAATGA
TGCAAACCTGTTTATACACACATATATACATAGATGTTATATATTTACAAACAGATCTAGTCGAATATTATGAAATTAAA
ACCCAGTTTTGTTCAATTCAATTCGATGAGTTGAGATGCCTCCGCATATGTCAAAGATTATGAAACAAAACACACACAAA
TTGTTACTCATCACACAGATTTTTACGTTACGCTTTATTGTATATACTATTGATTTAATGTTTATTTAAACTCTGTTTAT
TTTTTTCAATAAATGTTCGATATATAAACCAGCCTTGATTTTAACGCATCGCATAAATTCACGGAAATGAAACCGCCGCA
AAGTAGACCACAATTAAAGCTTTCCTAAACTAAGATTCGGGTGAAATAAAATAAAATCGCATGAAATAAACACATTTTAT
AATTATAGAAGGTAACAATGAAAAATAGTTTACACAAAACAAATTTGTACACCTTCAGAGATTCATTCATTTCATTTGAT
CCATCAACGCCTTTTTAAGTAGCAGCAGGAATTGCCTAAAAACTTTTATTAAAATACATATCAAAGCTCATAGAAGAAAC
ATAAACGAAGCTAACTAAAATATTTACAAAAAAATATATGACACGAATCTTTATGAAACTCTCATAAGTAGCTATGAAGT
ATATGCCAACCCAACTATAAACTCACAAAACTAACACCCAAGTATTTTAGATAAAATGTATGTCCACAAATGCTGGCAAG
CGTTTGTTGGCCAACAAAGAAATAAATATAAAACCCAAAAAAGCACGATCTAATTCAAAAAAAAAAAAAAAACTTAAACC
AAACCTAAACCAAATTTAAACCTTGTGATAATGAACACAAACAAAAATCCTAAATTTAAAAACAAACCTTTGCATACGAA
GTTTTATTGCAATTAATTGAGAGCAGGTTATTGAGGGCCACGGTTACCAATTGTTTAAATAATATTACCTATATAGAACA
CAATATGCGTATACACGAAATGCTTTTTGCAAATAAATACATTTATGAATTTAGAGATTTGTAGATTTTTGGGAAATTTT
CTTTTCGCCATTTTGCAAGCTCTTCGCAGTTAATTCTCATTTAGCAAAAAAAAAATATATTTAACTAAATAGCAACTACG
AGATGGAAAACCCAAAGACAAGGACAATCTTTTTGCAATTTACAAAAACGAAAAAGTTAATCTGAGTAAAAGGAAATGCT
AGGTCATCTTTCAAACAAGCAATGCCGAATAATTCAGAATCCTTTTTGTATAATTAGCTGCTTATATAGAACACAAAAAA
AAACTGAACTCCAAATTCATCGCGTCCAATGACAAATGTTTTTGTTGCGCAAATATAGTCAAGGGTAAGAAATGTGAGTG
GAATTTGCTGAATATGTGGCCAATATAAGGAATGTACAAATTAAATACGATAAAGATGGACCCTAAGAAACTATTATTCG
ATTCGTTCTTTGAACAGCTTAACCATGTAACTCCGTTAAATGTTAGTTAGCAATCGATTTGAGTGAAGGTGCCTTCTTTG
AGAGAATTAAAAACTTATTGATTGCGTAGATGGTTTCAGGCGAAACACAGTTTTTGTTATTACGAATGGAAACCCGACGA
ATGTATGTATGTGCCCTATAAGGATTTCTGTTTGGGATTGTTTTTAACTCCTTACAAGCTAAACTGCTGATAAAATGAAG
TAGAAGCTAATCCAAAGACCAGTAACATTACAAAAAATGTATTTAAATAGATCTAAAGCAAAGCCATAAAAGTTCACACT
TGAAAAAGCATTAATGAAATTAGCAAACAAGAAAATTCTAAAAAAAAAGAGATTTGAAACGCATCATGAAAATCTGTTAC
ATTTTATCATATTTGATGGGTGCAAAACGCAGTTAAAAACACTTTTTAAATTGTCATTACTCCAAAGCTTTATAATTTGT
AAATGCTATAAACGAAATGTAAATACTAATGTATCAAGACAGTTAGCAGTTAATTCATTTTATCGAATAACTTTAAACTA
ATTTCTTTATAAACAATATTTGCTAAAACCATGACAGTCCAACTGAACTGTTTGCTAGAGATTTGTTAAAAAATTATATA
TCTGAAATACGTTTAGAAAAGAAAAAAAAAAAGTTAAGCCATTGGGACAATTTGTGTTGCCCAATTTATTTCACATACGA
GTAGATTTCTTAAAGATCAATTACAAAAAACCGAAGTCCCCACAATGCTACCAAACGTAATAATTATAATAACAACTTTT
TTATAATGCACAATATTGAGCATAATAAAACCGATTTATTAACAATGCATTCCCAAAACGAACATCATGTAAATACACCA
AATACATAAAACAACTCAAAAACTAGTTATAAACGAGTAAATATTTGAAAAAAAAAAAAACGATAAATTGGAAAACAACA
AACGAACAACCAGAAAACTAATAAACAAAGCAGCTTCGCATTAATAAAGATCGTCTCAATCAGAAAACG
          Other Products of this Gene
          Other Transcripts
          Name
          FlyBase ID
          Length (nt)
          pHCl-1-RC
          FBtr0334972
          3361
          pHCl-1-RD
          FBtr0334973
          3164
          pHCl-1-RE
          FBtr0334974
          3239
          pHCl-1-RF
          FBtr0334975
          3293
          pHCl-1-RG
          FBtr0334976
          3687
          pHCl-1-RH
          FBtr0334971
          3247
          pHCl-1-RI
          FBtr0334970
          3223
          pHCl-1-RJ
          FBtr0334977
          3277
          pHCl-1-RK
          FBtr0334978
          3199
          pHCl-1-RL
          FBtr0334979
          5941
          pHCl-1-RM
          FBtr0334980
          3818
          pHCl-1-RO
          FBtr0334982
          3743
          pHCl-1-RP
          FBtr0334983
          3218
          pHCl-1-RS
          FBtr0474160
          3277
          pHCl-1-RT
          FBtr0474161
          3271
          pHCl-1-RU
          FBtr0474162
          3226
          Polypeptides
          Derived from THIS transcript
          Name
          FlyBase ID
          Length (aa)
          pHCl-1-PN
          FBpp0306994
          978
          Derived from OTHER transcripts
          Name
          FlyBase ID
          Length (aa)
          pHCl-1-PC
          FBpp0306985
          637
          pHCl-1-PD
          FBpp0306986
          737
          pHCl-1-PE
          FBpp0306987
          762
          pHCl-1-PF
          FBpp0306988
          779
          pHCl-1-PG
          FBpp0306989
          681
          pHCl-1-PH
          FBpp0306984
          762
          pHCl-1-PI
          FBpp0306983
          754
          pHCl-1-PJ
          FBpp0306990
          772
          pHCl-1-PK
          FBpp0306991
          746
          pHCl-1-PL
          FBpp0306992
          747
          pHCl-1-PM
          FBpp0306993
          954
          pHCl-1-PO
          FBpp0306995
          929
          pHCl-1-PP
          FBpp0306996
          754
          pHCl-1-PS
          FBpp0423159
          774
          pHCl-1-PT
          FBpp0423160
          770
          pHCl-1-PU
          FBpp0423161
          755
          Comments

          Extended 3' UTR based on RNA-Seq and/or EST data.

          External Crossreferences and Linkouts ( 1 )
          Crossreferences
          RefSeq - A comprehensive, integrated, non-redundant, well-annotated set of reference sequences including genomic, transcript, and protein.
          Synonyms and Secondary IDs (3)
          Reported As
          Symbol Synonym
          CG44099-RN
          pHCl-1-RN
          pHCl-RN
          Secondary FlyBase IDs
            References (0)